| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,977,936 | Δ1 bp | 6.4% | coding (964/1263 nt) | lysA ← | diaminopimelate decarboxylase, PLP‑binding |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,977,936 | 0 | C | . | 6.4% | 444.4 / 23.7 | 125 | coding (964/1263 nt) | lysA | diaminopimelate decarboxylase, PLP‑binding |
| Reads supporting (aligned to +/- strand): ref base C (61/56); new base . (4/4); total (65/60) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.65e-01 | |||||||||||
Only 100 of 125 total aligned reads displayed.
CCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCACCTGAGTAATTAATACGCCAGACTGCGCTACC > NC_000913/2977800‑2978081 | ccTGCCTTCAGTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑c > 3:669989/1‑148 (MQ=255) ttCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGatat > 4:801517/1‑148 (MQ=255) tCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCa > 3:1047214/1‑135 (MQ=255) tCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCa < 4:1047214/135‑1 (MQ=255) tCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATggtggt > 4:1140111/1‑148 (MQ=255) cAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGatat < 2:775797/137‑1 (MQ=255) cAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGatat > 1:775797/1‑137 (MQ=255) ttCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTAc > 4:354939/1‑142 (MQ=255) ttCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTAc < 3:354939/142‑1 (MQ=255) tCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGTCGTCGGTTTACACCGTTGGCGCGTGTTACAGAGAACGACCATCAGCTGCCAGGGCA‑CTGAGCTGGTGGTAACTAGCGTACATTGCCg > 4:337580/1‑148 (MQ=255) tCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATAtggt > 2:65183/1‑127 (MQ=255) tCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATAtggt < 1:65183/127‑1 (MQ=255) cAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATAtgg > 4:1123643/1‑125 (MQ=255) aaCATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCggg > 1:1127381/1‑148 (MQ=255) aaCATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCggg < 2:1127381/148‑1 (MQ=255) aCATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATAtg > 2:478318/1‑122 (MQ=255) aCATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATAtg < 1:478318/122‑1 (MQ=255) aCATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGc > 1:729003/1‑143 (MQ=255) tttCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTa < 2:355363/125‑1 (MQ=255) tttCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTa > 1:355363/1‑125 (MQ=255) tttCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTg < 4:218985/139‑1 (MQ=255) cccTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGa > 2:966511/1‑148 (MQ=255) cTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATc > 4:687980/1‑148 (MQ=255) tCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGt < 1:56172/148‑1 (MQ=255) tCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGt < 2:283513/148‑1 (MQ=255) tCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGt > 2:56172/1‑148 (MQ=255) tCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGt < 1:296089/148‑1 (MQ=255) tCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGt < 3:337580/148‑1 (MQ=255) acaaatggggagccgccactttgtgctggttgatgccgggttcaacgatctgatgcgcccggcaatgtacggtagttaccaccatATCAGCTGCCAGGGCA‑CTGata > 4:534826‑M1/86‑107 (MQ=255) ctgctgGGTTAAGCAATCGCCAGCTTCACATAACGGTCCGGCGACGCCGGGTTCCACCGTTGGGGCGTGTACCAGAGAACGACCATCAGCGGCCAGGGCA‑CTGAAATGCAGGACACTACCGTCCATTGCCGGCCGCATCAGATCGttt > 2:296089/1‑147 (MQ=255) gctgGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGaa > 3:186587/1‑148 (MQ=255) gctgGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGAGCGTTGaa < 3:801517/148‑1 (MQ=255) tgGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATAtggt < 4:495928/106‑1 (MQ=255) tgGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATAtggt > 3:495928/1‑106 (MQ=255) gagccgccactttgtgctggttgatgccgggttcaacgatctgatgcgcccggcaatgtacggtagttaccaccatATCAGCTGCCAGGGCA‑CTGat < 3:159469‑M1/21‑1 (MQ=255) aaaGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAAcc > 3:1026049/1‑143 (MQ=255) aaaGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAAcc < 4:1026049/143‑1 (MQ=255) aaaGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCa > 2:1055539/1‑148 (MQ=255) aaGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCAt < 3:687980/148‑1 (MQ=255) aCATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCaa > 3:953140/1‑148 (MQ=255) cATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAAc < 3:1140111/148‑1 (MQ=255) cactttgtgctggttgatgccgggttcaacgatctgatgcgcccggcaatgtacggtagttaccaccatATCAGCTGCCAGGGCA‑CTGatat < 2:59240‑M1/23‑1 (MQ=255) aTCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCa > 4:271605/1‑142 (MQ=255) aTCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCa < 3:271605/142‑1 (MQ=255) tCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGt > 1:213930/1‑130 (MQ=255) cGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATAtg < 4:737563/91‑1 (MQ=255) tCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGCCCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACTTTGCCg > 2:1067201/1‑106 (MQ=255) tCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCg < 1:1067201/106‑1 (MQ=255) tAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCAt > 1:945094/1‑128 (MQ=255) tAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCAt < 2:945094/128‑1 (MQ=255) aaCGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGc > 3:49443/1‑125 (MQ=255) aaCGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTggcggc > 1:552491/1‑148 (MQ=255) cGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTc > 3:428737/1‑148 (MQ=255) cGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTc < 2:552491/148‑1 (MQ=255) gTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTccc < 1:1055539/148‑1 (MQ=255) ccGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCa < 4:428737/148‑1 (MQ=255) cGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATAtgg > 3:1058436/1‑71 (MQ=255) cGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATAtgg < 4:1058436/71‑1 (MQ=255) gCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCgg < 3:719163/115‑1 (MQ=255) gCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCgg > 4:719163/1‑115 (MQ=255) cgacgaCGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCAtttg > 3:1110145/1‑148 (MQ=255) acgacgGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACaa > 1:108079/1‑127 (MQ=255) acgacgGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACaa < 2:108079/127‑1 (MQ=255) gacgGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCAtttgtttg < 3:1012097/148‑1 (MQ=255) gacgGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCAtttgtttg < 4:186587/148‑1 (MQ=255) acgGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTg > 2:695022/1‑102 (MQ=255) acgGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTg < 1:695022/102‑1 (MQ=255) acgGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCAtttgtttg < 3:519597/147‑1 (MQ=255) acgGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCAtttgtttg > 4:519597/1‑147 (MQ=255) ttCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCATCACAAAGTGGCTGCTCCCCATTTGTTTGACGCTc < 4:1110145/148‑1 (MQ=255) ttCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGc > 3:336544/1‑115 (MQ=255) tCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTa > 4:1048595/1‑66 (MQ=255) aCCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGcc > 2:218978/1‑39 (MQ=255) aCCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCa > 4:622753/1‑148 (MQ=255) aCCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCa > 2:179606/1‑148 (MQ=255) ccGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCg > 2:741901/1‑65 (MQ=255) cGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATc > 3:106791/1‑102 (MQ=255) cGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATc < 4:106791/102‑1 (MQ=255) gcgcGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACAt > 3:214501/1‑64 (MQ=255) gcgcGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACAt < 4:214501/64‑1 (MQ=255) cgcgTGTTCCAGCGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCACCTGAGta < 1:179606/148‑1 (MQ=255) tCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCACCTGAGTAATTAATa > 2:1125118/1‑148 (MQ=255) ccAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCACCTGAGTAATTAATAc > 3:844547/1‑148 (MQ=255) cAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGa > 1:1030313/1‑70 (MQ=255) cAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGa < 2:1030313/70‑1 (MQ=255) agagAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCAtttgtttg > 1:949756/1‑120 (MQ=255) gagaACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCAt < 1:409406/64‑1 (MQ=255) agaACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTccc < 2:138008/108‑1 (MQ=255) agaACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTccc > 1:138008/1‑108 (MQ=255) accatATCAG‑TGCCCTGGCAGCTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAg < 2:716447‑M1/88‑1 (MQ=255) accatATCAG‑TGCCCTGGCAGCTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAg > 1:716447‑M1/6‑93 (MQ=255) catATCAG‑TGCCCTGGCAGCTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCaa < 2:822691‑M1/77‑1 (MQ=255) catATCAG‑TGCCCTGGCAGCTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCaa > 1:822691‑M1/4‑80 (MQ=255) catATCAG‑TGCCCTGGCAGCTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCAtttg > 3:1067184‑M1/4‑108 (MQ=255) catATCAG‑TGCCCTGGCAGCTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCAtt < 1:580151‑M1/103‑1 (MQ=255) aCCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTg > 2:554428/1‑93 (MQ=255) aCCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTg < 1:554428/93‑1 (MQ=255) CAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCACCTGAGTAATTAATACGCCAGACTGCGCTAc > 4:401953‑M1/1‑148 (MQ=255) CAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCACCTGAGTAATTAATACGCCAGACTGCGCTAc > 3:622753‑M1/1‑148 (MQ=255) AGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCACCTGAGTAATTAATACGCCAGACTGCGCTAcc < 3:845638‑M1/148‑1 (MQ=255) | CCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATAACGGTCCGGCGACGACGGTTTCCACCGTTGGCGCGTGTTCCAGAGAACGACCATCAGCTGCCAGGGCA‑CTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCACCTGAGTAATTAATACGCCAGACTGCGCTACC > NC_000913/2977800‑2978081 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |