| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 284258 = | 74 (0.790) | 6 (0.070) | 6/188 | NT | 8.7% | coding (1058/1968 nt) | yagF | CP4‑6 prophage; dehydratase family protein |
| ? | NC_000913 | 284307 = | 56 (0.640) | coding (1107/1968 nt) | yagF | CP4‑6 prophage; dehydratase family protein | |||||
AGGTTCTCGCCCACCGTCTGGCCGGTCACGGTCATGGCGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/284381‑284258‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgatGCTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAACCTTGAATGGTGGC > NC_000913/284307‑284392 AGGTTCTCGCCCACCGTCTGGCCGGTCACGGTCATGGCGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGAT < 3:463364/124‑1AGGTTCTCGCCCACCGTCTGGCCGGTCACGGTCATGGCGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGAT > 4:463364/1‑124 ACCGTCTGGCCGGTCACGGTCATGGCGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTG > 1:1076225/1‑110 ACCGTCTGGCCGGTCACGGTCATGGCGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTG < 2:1076225/110‑1 ACCGTCTGGCCGGTCACGGTCATGGCGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGG > 3:315920/1‑107 ACCGTCTGGCCGGTCACGGTCATGGCGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGG < 4:315920/107‑1 CGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGG > 1:534522/1‑83 CGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGG < 2:534522/83‑1 ATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTG > 1:886014/1‑78 ATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTG < 2:886014/78‑1 ACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGATAGTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAACCTTGA > 3:823534/1‑124 ACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGATAGTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAACCTTGA < 4:823534/124‑1 CTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGATGCTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAA < 1:520117/116‑1 CTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGATGCTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAA > 2:520117/1‑116 TCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGGTGCTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAACCTTGAATGGTGGC < 3:450177/129‑1 TCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGGTGCTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAACCTTGAATGGTGGC > 4:450177/1‑129 AGGTTCTCGCCCACCGTCTGGCCGGTCACGGTCATGGCGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/284381‑284258‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgatGCTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAACCTTGAATGGTGGC > NC_000913/284307‑284392 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |