| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 284691 | 74 (0.790) | 6 (0.070) | 6/192 | NT | 7.8% | coding (1491/1968 nt) | yagF | CP4‑6 prophage; dehydratase family protein |
| ? | NC_000913 | = 284723 | 71 (0.790) | coding (1523/1968 nt) | yagF | CP4‑6 prophage; dehydratase family protein | |||||
CAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/284649‑284691‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCCGAGACAAACACCCGCACCCGGCCGGTGTGGT < NC_000913/284723‑284603 CAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCA > 1:673879/1‑77CAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCA < 2:673879/77‑1 GGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGCCGGTGCCGGACGGCCCGCCGCCGATCACCACC < 3:201784/73‑1 GGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGCCGGTGCCGGACGGCCCGCCGCCGATCACCACC > 4:201784/1‑73 AGCGGGAAGAGATTGTGCAGGGCGATATCATGCCGGTGCCGGACGGCCCGCCGCCGATCACC < 3:1117695/62‑1 AGCGGGAAGAGATTGTGCAGGGCGATATCATGCCGGTGCCGGACGGCCCGCCGCCGATCACC > 4:1117695/1‑62 TGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCCGAGACAAACACCCGCACCCGGCCGGTGTGGT > 3:674897/1‑123 TGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCCGAGACAAACACCCGCACCCGGCCGGTGTGGT < 4:674897/123‑1 TGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCC < 1:356883/92‑1 TGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCC > 2:356883/1‑92 TGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTG > 3:994180/1‑77 TGCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTG < 4:994180/77‑1 CAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/284649‑284691‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgCCGGTGCCGGACGGCCCGCCGCCGATCACCACCATGATATCGCCCTGCACAATCTCTTCCCGCTTGATCGCCTTGATCGCCTGCGCTTCCGAGACAAACACCCGCACCCGGCCGGTGTGGT < NC_000913/284723‑284603 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |