| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 574464 | 12 (0.130) | 4 (0.050) | 4/184 | NT | 29.6% | intergenic (+125/+65) | quuD/nmpC | DLP12 prophage; putative antitermination protein/DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage |
| ? | NC_000913 | = 574470 | 8 (0.090) | intergenic (+131/+59) | quuD/nmpC | DLP12 prophage; putative antitermination protein/DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage | |||||
TAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/574431‑574464‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagtggctCCCTCAAGCCACTTCCTT < NC_000913/574470‑574453 TAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTCCCTCAAGCCA < 1:507928/45‑1TAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTCCCTCAAGCCA > 2:507928/1‑45 GAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTCCCTCAAGCCACTTCCTT > 1:783995/1‑50 GAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTCCCTCAAGCCACTTCCTT < 2:783995/50‑1 TAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/574431‑574464‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagtggctCCCTCAAGCCACTTCCTT < NC_000913/574470‑574453 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |