New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2925373	65 (0.700)	8 (0.090)	7/188	NT	10.9%	coding (26/849 nt)	queF	7‑cyano‑7‑deazaguanine reductase (NADPH‑dependent)
	?	NC_000913	= 2925381	70 (0.800)					coding (34/849 nt)	queF	7‑cyano‑7‑deazaguanine reductase (NADPH‑dependent)

CACGCATCGCAGTAGCGTGCAGTAAAATCTTTCAGGGCTTGTGCGGTCAAATCGTCCACTAATTTCTCTCTTCACTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2925222‑2925373 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggcCCGCAAGTGCCTGATGGTTTGCATAAGAAGACATGTTTCACCGTCATAAACCAGATAAACTAAACGACAAGTGTATCTGGTTTAAGTGAAGAGAGAAATTAGTGGACGATTTGACCGCACAAGCCCTGAAAGA  <  NC_000913/2925381‑2925249                                                                                                                                                                                                                                                                                               CACGCATCGCAGTAGCGTGCAGTAAAATCTTTCAGGGCTTGTGCGGTCAAATCGTCCACTAATTTCTCTCTTCACTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATC                                                                                                                                           <  4:27792/148‑1                                                CAAATCGTCCACTAATTTCTCTCTTCACTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATC                                                                                                                                           >  4:940876/1‑101                                                CAAATCGTCCACTAATTTCTCTCTTCACTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATC                                                                                                                                           <  3:940876/101‑1                                                        CCACTAATTTCTCTCTTCACTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGCCCGCAAGTGCCTG                                                                                                                          >  4:778630/1‑110                                                        CCACTAATTTCTCTCTTCACTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGCCCGCAAGTGCCTG                                                                                                                          <  3:778630/110‑1                                                                TTCTCTCTTCACTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAG                                                                                                                                         >  1:552990/1‑87                                                                TTCTCTCTTCACTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAG                                                                                                                                         <  2:552990/87‑1                                                                       TTCACTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGCCCGCAAGTGCCTGAT                                                                                                                        <  3:602181/97‑1                                                                       TTCACTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGCCCGCAAGTGCCTGAT                                                                                                                        >  4:602181/1‑97                                                                           CTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGC                                                                                                                                       >  3:528826/1‑78                                                                           CTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGC                                                                                                                                       <  4:528826/78‑1                                                                                             GTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGCCCGCAAGTGCCTGATGGTT                                                                                                                    >  3:302303/1‑79                                                                                             GTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGCCCGCAAGTGCCTGATGGTT                                                                                                                    <  4:302303/79‑1                                                                                                         ATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGCCCGCAAGTGCCTGAT                                                                                                                        <  2:387946/63‑1                                                                                                         ATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGCCCGCAAGTGCCTGAT                                                                                                                        >  1:387946/1‑63                                                                                                                                                   TCAGGCCCGCAAGTGCCTGATGGTTTGCATAAGAAGACATGTTTCACCGTCATAAACCAGATAAACTAAACGACAAGTGTATCTGGTTTAAGTGAAGAGAGAAATTAGTGGACGATTTGACCGCACAAGCCCTGAAAGA  <  2:643986/139‑1                                                                                                                                                   TCAGGCCCGCAAGTGCCTGATGGTTTGCATAAGAAGACATGTTTCACCGTCATAAACCAGATAAACTAAACGACAAGTGTATCTGGTTTAAGTGAAGAGAGAAATTAGTGGACGATTTGACCGCACAAGCCCTGAAAGA  >  1:643986/1‑139                                                                                                                                                      GGCCCGCAAGTGCCTGATGGTTTGCATAAGAAGACATGTTTCACCGTCATAAACCAGATAAACTAAACGACAAGTGTATCTGGTTTAAG                                                 >  3:991/1‑89                                                                                                                                                      GGCCCGCAAGTGCCTGATGGTTTGCATAAGAAGACATGTTTCACCGTCATAAACCAGATAAACTAAACGACAAGTGTATCTGGTTTAAG                                                 <  4:991/89‑1                                                                                                                                                                                                                                                                                               CACGCATCGCAGTAGCGTGCAGTAAAATCTTTCAGGGCTTGTGCGGTCAAATCGTCCACTAATTTCTCTCTTCACTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2925222‑2925373 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggcCCGCAAGTGCCTGATGGTTTGCATAAGAAGACATGTTTCACCGTCATAAACCAGATAAACTAAACGACAAGTGTATCTGGTTTAAGTGAAGAGAGAAATTAGTGGACGATTTGACCGCACAAGCCCTGAAAGA  <  NC_000913/2925381‑2925249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.