| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3226765 = | 66 (0.710) | 8 (0.090) | 6/190 | NT | 12.2% | coding (532/1434 nt) | ygjI | putative transporter |
| ? | NC_000913 | 3226786 = | 52 (0.590) | coding (553/1434 nt) | ygjI | putative transporter | |||||
TTCGAACCGCCTTTGACGTCGTTAACGTACACAGCGACGGACTCCGCGCCACCTGCGGCCATAAAGATCCAGGTGGTAACGCCGAGGAACGCCCAGTTGAAGTTCGGGATCATCGCGTCAACGGTGATGGCGTCAGCAGGCTGTACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3226913‑3226765‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgccATCACCGTTGACGCGATGATCCCGAACTTCAACTGGGCGTTCCTCGGCGTTACCACCTGGATCTTTATGGCCGCAGGTGGCGCGGAGTCCGTCGCTGTGTACGTTAACGACGTCAAAGGCGGTTCGAAATCGTTCGTTAAAGTG > NC_000913/3226786‑3226929 TTCGAACCGCCTTTGACGTCGTTAACGTACACAGCGACGGACTCCGCGCCACCTGCGGCCATAAAGATCCAGGTGGTAACGCCGAGGAACGCCCAGTTGAAGTTCGGGATCATCGCGTCAACGGTGATGGCGTCAGCAGGCTGTACGC > 2:339441/1‑148 TGGCGTCAGCAGGCTGTACGCCATCACCGTTGACGCGATGATCCCGAACTTCAACTGGGCGTTCCTCGGCGTTACCA < 3:184008/77‑1 TGGCGTCAGCAGGCTGTACGCCATCACCGTTGACGCGATGATCCCGAACTTCAACTGGGCGTTCCTCGGCGTTACCA > 4:184008/1‑77 GCGTCAGCAGGCTGTACGCCATCACCGTTGACGCGATGATCCCGAACTTCAACTGGGCGTTCCTCGGCGTTACCACCTGGATCTTTATGGCCGCAGGTGGCGCGGAGTCCGTCGCTGTGTACGTTAACGACGTCAAAGGCGGTTCGAA > 4:796756/1‑148 GCGTCAGCAGGCTGTACGCCATCACCGTTGACGCGATGATCCCGAACTTCAACTGGGCGTTCCTCGGCGTTACCACCTGGATCTTTATGGCCGCAGGTGGCGCGGAGTCCGTCGCTGTGTACGT < 1:189488/124‑1 GCGTCAGCAGGCTGTACGCCATCACCGTTGACGCGATGATCCCGAACTTCAACTGGGCGTTCCTCGGCGTTACCACCTGGATCTTTATGGCCGCAGGTGGCGCGGAGTCCGTCGCTGTGTACGT > 2:189488/1‑124 GCGTCAGCAGGCTGTACGCCATCACCGTTGACGCGATGATCCCGAACTTCAACTGGGCGTTCCTCGGCG > 3:1051824/1‑69 GCGTCAGCAGGCTGTACGCCATCACCGTTGACGCGATGATCCCGAACTTCAACTGGGCGTTCCTCGGCG < 4:1051824/69‑1 GCAGGCTGTACGCCATCACCGTTGACGCGATGATCCCGAACTTCAACTGGGCGTTCCTCGGCGTTACCACCTGGATCTTTATGGCCGCAGGTGGCGCGGAGTCCGTCGCTGTGTACGTTAACGACGTCAAAGGCGGTTCGAAATCGTT < 3:796756/148‑1 CGCCATCACCGTTGACGCGATGATCCCGAACTTCAACTGGGCGTTCCTCGGCGTTACCACCTGGATCTTTATGGCCGCAGGTGGCGCGGAGTCCGTCGCTGTGTACGTTAACGACGTCAAAGGCGGTTCGAAATCGTTCGTTAAAGTG < 3:685072/148‑1 CCATCACCGTTGACGCGATGATCCCGAACTTCAACTGGGCGTTCCTCGGCGTTACCACCTGGATCTTTATGGCCGCAGGTGGCGC < 3:652376/85‑1 CCATCACCGTTGACGCGATGATCCCGAACTTCAACTGGGCGTTCCTCGGCGTTACCACCTGGATCTTTATGGCCGCAGGTGGCGC > 4:652376/1‑85 TTCGAACCGCCTTTGACGTCGTTAACGTACACAGCGACGGACTCCGCGCCACCTGCGGCCATAAAGATCCAGGTGGTAACGCCGAGGAACGCCCAGTTGAAGTTCGGGATCATCGCGTCAACGGTGATGGCGTCAGCAGGCTGTACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3226913‑3226765‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgccATCACCGTTGACGCGATGATCCCGAACTTCAACTGGGCGTTCCTCGGCGTTACCACCTGGATCTTTATGGCCGCAGGTGGCGCGGAGTCCGTCGCTGTGTACGTTAACGACGTCAAAGGCGGTTCGAAATCGTTCGTTAAAGTG > NC_000913/3226786‑3226929 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |