| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3520371 = | 81 (0.870) | 7 (0.080) | 7/186 | NT | 8.5% | coding (333/1239 nt) | hofQ | DNA catabolic putative fimbrial transporter |
| ? | NC_000913 | 3520402 = | 75 (0.860) | coding (302/1239 nt) | hofQ | DNA catabolic putative fimbrial transporter | |||||
GGACTGATAACGCGGCAGGAAGGCAACATTCTCTCAGTGCATTCCATTGCCTGGCAGAATAACAATATCGCCCGCCAGGAGGCGGAGCAGGCGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3520469‑3520371‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcgATATTGTTATTCTGCCAGGCAATGGAATGCACTGAGAGAATGTTGCCTTCCTGCCGCGTTATCAGTCCGGCGCTTTTCACTACAGTTTGTAGTGCCTGCTTCCAGGGAACATCTGTTAG > NC_000913/3520402‑3520520 GGACTGATAACGCGGCAGGAAGGCAACATTCTCTCAGTGCATTCCATTGCCTGGCAGAATAACAATATCGCCCGCCAGGAGGCGGAGCAGGCG < 3:1036746/93‑1GGACTGATAACGCGGCAGGAAGGCAACATTCTCTCAGTGCATTCCATTGCCTGGCAGAATAACAATATCGCCCGCCAGGAGGCGGAGCAGGCG > 4:1036746/1‑93 AAGGCAACATTCTCTCAGTGCATTCCATTGCCTGGCAGAATAGCAATATCGCCCGCCAGGAGGCGGAGCAGGCGCG < 3:974995/76‑1 AAGGCAACATTCTCTCAGTGCATTCCATTGCCTGGCAGAATAGCAATATCGCCCGCCAGGAGGCGGAGCAGGCGCG > 4:974995/1‑76 ATCGCCCGCCAGGAGGCGGAGCAGGCGCGGGCGATATTGTTATTCTGCCAGGCAATGGAATGCACTGAGAGAATGTTGCCTTCCTGCCGCGTTATCAGTCCGGCGCTTTTCACTACAGTTTGTAGTGCCTGCTTCCAGGGAACATCTG > 3:621325/1‑148 TCGCCCGCCAGGAGGCGGAGCAGGCGCGGGCGATATTGTTATTCTGCCAGGCAATGGAATGCACTGAGAGAATGTTGCCTTCCTGCCGCGTTATCAGTCCGGCGCTTTTCACTACAGTTTGTAGTGCCTGCTTCCAGGGAACATCTGT > 4:1132578/1‑148 CGCCCGCCAGGAGGCGGAGCAGGCGCGGGCGATATTGTTATTCTGCCAGGCAATGGAATGCACTGAGAGAA > 1:1018403/1‑71 CGCCCGCCAGGAGGCGGAGCAGGCGCGGGCGATATTGTTATTCTGCCAGGCAATGGAATGCACTGAGAGAA < 2:1018403/71‑1 CCCGCCAGGAGGCGGAGCAGGCGCGGGCGATATTGTTATTCTGCCAGGCAATGGAATGCACTGAGAGAATGTTGCCTTCCTGCCGCGTTATCAGTCCGGCGCTTTTCACTACAGTTTGTAGTGCCTGCTTCCAGGGAACATCTGTTAG < 3:1132578/148‑1 CCCGCCAGGAGGCGGAGCAGGCGCGGGCGATATTGTTATTCTGCCAGGCAATGGAATGCACTGAGAGAATGTTGCCTTCCTGCCGCGT < 1:1010397/88‑1 CCCGCCAGGAGGCGGAGCAGGCGCGGGCGATATTGTTATTCTGCCAGGCAATGGAATGCACTGAGAGAATGTTGCCTTCCTGCCGCGT > 2:1010397/1‑88 GGCGATATTGTTATTCTGCCAGGCAATGGAATGCACTGAGAGAATGTTGCCTTCCTGCCGCGTTATCAGTCCGGCGCTTTTCACTACAGTTTGTAGTGCCTGCTTCCAGGGAACA > 3:924855/1‑115 GGCGATATTGTTATTCTGCCAGGCAATGGAATGCACTGAGAGAATGTTGCCTTCCTGCCGCGTTATCAGTCCGGCGCTTTTCACTACAGTTTGTAGTGCCTGCTTCCAGGGAACA < 4:924855/115‑1 GCGATATTGTTATTCTGCCAGGCAATGGAATGCACTGAG > 1:750234/1‑39 GCGATATTGTTATTCTGCCAGGCAATGGAATGCACTGAG < 2:750234/39‑1 GGACTGATAACGCGGCAGGAAGGCAACATTCTCTCAGTGCATTCCATTGCCTGGCAGAATAACAATATCGCCCGCCAGGAGGCGGAGCAGGCGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3520469‑3520371‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcgATATTGTTATTCTGCCAGGCAATGGAATGCACTGAGAGAATGTTGCCTTCCTGCCGCGTTATCAGTCCGGCGCTTTTCACTACAGTTTGTAGTGCCTGCTTCCAGGGAACATCTGTTAG > NC_000913/3520402‑3520520 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |