| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3680367 = | NA (NA) | 4 (0.050) | 4/184 | NT | NA | noncoding (1/76 nt) | REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3680397 = | NA (NA) | noncoding (31/76 nt) | REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
CTACCGCCGCTGCGACCACCTCTGTCGCCACGGATGACGTACATCCTGAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3680520‑3680367‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatccagcTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAG > NC_000913/3680397‑3680543 CTACCGCCGCTGCGACCACCTCTGTCGCCACGGATGACGTACATCCTGAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTA < 2:1073313/148‑1 CCGCTGCGACCACCTCTGTCGCCACGGATGACGTACATCCTGAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGC < 3:663212/148‑1 ACCACCTCTGTCGCCACGGATGACGTACATCCTGAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTAT > 1:298300/1‑135 ACCACCTCTGTCGCCACGGATGACGTACATCCTGAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTAT < 2:298300/135‑1 CCACCTGTGTCGCCACGGATGACGTACATCCTGAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCC > 4:1098224/1‑136 CCACCTCTGTCGCCACGGATGACGTACATCCTGAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCC < 3:1098224/136‑1 CCTCTGTCGCCACGGATGACGTACATCCTGAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTAT > 1:1013113/1‑131 CCTCTGTCGCCACGGATGACGTACATCCTGAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTAT < 2:1013113/131‑1 TCTGTCGCCACGGATGACGTACATCCTGAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAG < 1:1011799/133‑1 TCTGTCGCCACGGATGACGTACATCCTGAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAG > 2:1011799/1‑133 TACATCCTGAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTAT > 4:756066/1‑110 TACATCCTGAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTAT < 3:756066/110‑1 TACATCCTGAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTA > 4:921224/1‑109 TACATCCTGAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTA < 3:921224/109‑1 TGAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTAT < 4:552472/103‑1 TGAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTAT > 3:552472/1‑103 ACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCA < 4:86331/99‑1 ACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCA > 3:86331/1‑99 CGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTT < 2:134818/93‑1 CGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTT > 1:134818/1‑93 CTGGATAGAGGGGTAACACTTTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATC < 4:482347/97‑1 CTGGATAGAGGGGTAACACTTTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATC > 3:482347/1‑97 ATAGAGGGGTAACACTTTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTG > 3:1097030/1‑78 ATAGAGGGGTAACACTTTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTG < 4:1097030/78‑1 ATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCA > 3:315960/1‑140 ATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCA < 4:315960/140‑1 ATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGG < 4:743075/136‑1 ATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGG > 3:743075/1‑136 TCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGAT < 4:251062/148‑1 TCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAG > 3:549669/1‑111 TCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAG < 4:549669/111‑1 CCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATT > 2:522445/1‑143 CCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATT < 1:522445/143‑1 CCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGA > 2:337025/1‑109 CCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGA < 1:337025/109‑1 CCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCAT > 1:228654/1‑40 CCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCAT < 2:228654/40‑1 CAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGG > 2:826321/1‑132 CAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGG < 1:826321/132‑1 GCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGAT > 4:353147/1‑144 GCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGAT < 3:353147/144‑1 GCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGC > 2:829635/1‑121 GCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGC < 1:829635/121‑1 CTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAG > 1:586614/1‑148 CTACCGCCGCTGCGACCACCTCTGTCGCCACGGATGACGTACATCCTGAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3680520‑3680367‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatccagcTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAG > NC_000913/3680397‑3680543 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |