| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4404334 = | 22 (0.240) | 4 (0.050) | 3/188 | NT | 15.5% | intergenic (+30/‑52) | hflC/yjeT | HflB protease modulator specific for phage lambda cII repressor/DUF2065 family protein |
| ? | NC_000913 | 4404361 = | 23 (0.260) | intergenic (+57/‑25) | hflC/yjeT | HflB protease modulator specific for phage lambda cII repressor/DUF2065 family protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CCATGCCTTCGGGTAAAGCATCGGCCCTAAACCTTCCAGTACCAAAACCAGGGCAAGCGCCAGCCAGATTGTCGAATTCATTCATTATCCTTATAGAAAAAGAAAACCACCGACATCCCTGAGGATGCGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4404466‑4404334‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtggTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTGGTA > NC_000913/4404361‑4404427 CCATGCCTTCGGGTAAAGCATCGGCCCTAAACCTTCCAGTACCAAAACCAGGGCAAGCGCCAGCCAGATTGTCGAATTCATTCATTATCCTTATAGAAAAAGAAAACCACCGACATCCCTGAGGATGCGGT < 3:987349/131‑1CCATGCCTTCGGGTAAAGCATCGGCCCTAAACCTTCCAGTACCAAAACCAGGGCAAGCGCCAGCCAGATTGTCGAATTCATTCATTATCCTTATAGAAAAAGAAAACCACCGACATCCCTGAGGATGCGGT > 4:987349/1‑131 ACCTTCCAGTACCAAAACCAGGGCAAGCGCCAGCCAGATTGTCGAATTCATTCATTATCCTTATAGAAAAAGAAAACCACCGACATCCCTGAGGATGCGGT > 1:987736/1‑101 ACCTTCCAGTACCAAAACCAGGGCAAGCGCCAGCCAGATTGTCGAATTCATTCATTATCCTTATAGAAAAAGAAAACCACCGACATCCCTGAGGATGCGGT < 2:987736/101‑1 TTCCAGTACCAAAACCAGGGCAAGCGCCAGCCAGATTGTCGAATTCATTCATTATCCTTATAGAAAAAGAAAACCACCGACATCCCTGAGGATGCGGTG < 1:1117331/99‑1 TTCCAGTACCAAAACCAGGGCAAGCGCCAGCCAGATTGTCGAATTCATTCATTATCCTTATAGAAAAAGAAAACCACCGACATCCCTGAGGATGCGGTG > 2:1117331/1‑99 CGAATTCATTCATTATCCTTATAGAAAAAGAAAACCACCGACATCCCTGAGGATGCG < 1:393472/57‑1 CGAATTCATTCATTATCCTTATAGAAAAAGAAAACCACCGACATCCCTGAGGATGCG > 2:393472/1‑57 CCACCGACATCCCTGAGGATGCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTGGTA > 3:256862/1‑94 CCACCGACATCCCTGAGGATGCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTGGTA < 4:256862/94‑1 CCACCGACATCCCTGAGGATGCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTG < 3:345689/73‑1 CCACCGACATCCCTGAGGATGCGGTGGTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTG > 4:345689/1‑73 CCATGCCTTCGGGTAAAGCATCGGCCCTAAACCTTCCAGTACCAAAACCAGGGCAAGCGCCAGCCAGATTGTCGAATTCATTCATTATCCTTATAGAAAAAGAAAACCACCGACATCCCTGAGGATGCGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4404466‑4404334‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtggTTTTCTTTTTCTATAAGGATAATGAATGAATTCGACAATCTGGCTGGCGCTTGCCCTGGTTTTGGTA > NC_000913/4404361‑4404427 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |