New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 66727	9 (0.100)	6 (0.070) +CTACACCGCT	6/180	NT	42.6%	noncoding (163/248 nt)	REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences
	?	NC_000913	2304400 =	NA (NA)					intergenic (+7/+708)	eco/mqo	ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain

CTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCA  >  NC_000913/66580‑66867                                                                                                                                                    |                                                                                                                                             cTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGc                                                                                                                                              >  3:800209/1‑148 (MQ=255)                       aGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTg                                                                                                                        <  4:800209/148‑1 (MQ=255)                                                                    aaTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATa                                                                                 <  1:332102/142‑1 (MQ=40)                                                                    aaTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATa                                                                                 >  2:332102/1‑142 (MQ=40)                                                                                                     aaaTCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCg                                                        <  1:1107784/134‑1 (MQ=255)                                                                                                     aaaTCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCg                                                        >  2:1107784/1‑134 (MQ=255)                                                                                                      aaTCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGAcg                                                                            <  3:301079/113‑1 (MQ=40)                                                                                                      aaTCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGAcg                                                                            >  4:301079/1‑113 (MQ=39)                                                                                                                      ccTGATAAGACGCGCCAGCGTCGCATCAGGCctacaccgctgtgaagtgcggcaccccgtaggtcagacaaggcggtcacgccgcatccgacatccaacgcccgagccggt                                                              <  3:877958‑M1/111‑81 (MQ=255)                                                                                                                      ccTGATAAGACGCGCCAGCGTCGCATCAGGCctacaccgctgtgaagtgcggcaccccgtaggtcagacaaggcggtcacgccgcatccgacatccaacgcccgagccggt                                                              >  4:877958‑M1/1‑31 (MQ=255)                                                                                                                        tGATAAGACGCGCCAGCGTCGCATCAGGCctacaccgctgtgaagtgcggcaccccgtaggtcagacaaggcggtcacgccgcatccgacatccaa                                                                           >  2:150101‑M1/1‑29 (MQ=255)                                                                                                                        tGATAAGACGCGCCAGCGTCGCATCAGGCctacaccgctgtgaagtgcggcaccccgtaggtcagacaaggcggtcacgccgcatccgacatccaa                                                                           <  1:150101‑M1/96‑68 (MQ=255)                                                                                                                             aGACGCGCCAGCGTCTTATCAGGCctacaccgctgtgaagtgcggcaccccgtaggtcagacaaggcggtcacgccgcatccgacatcca                                                                            >  4:191428‑M1/1‑24 (MQ=255)                                                                                                                             aGACGCGCCAGCGTCTTATCAGGCctacaccgctgtgaagtgcggcaccccgtaggtcagacaaggcggtcacgccgcatccgacatcca                                                                            <  3:191428‑M1/90‑67 (MQ=255)                                                                                                                                               tCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCca  <  1:65133/146‑1 (MQ=255)                                                                                                                                               tCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCca  >  2:65133/1‑146 (MQ=255)                                                                                                                                                cAGGCctacaccgctgtgaagtgcggcaccccgtaggtcagacaaggcggtcacgccgcatccgacatccaacgcccgagccggttgcctgatgcgacgctggcgcgtcttatcaggcctacaccgctgtga               <  4:364827‑M1/132‑128 (MQ=255)                                                                                                                                                cAGGCctacaccgctgtgaagtgcggcaccccgtaggtcagacaaggcggtcacgccgcatccgacatccaacgcccgagccggttgcctgatgcgacgctggcgcgtcttatcaggcctacaccgctgtga               >  3:364827‑M1/1‑5 (MQ=255)                                                                                                                                                cAGGCctacaccgctgtgaagtgcggcaccccgtaggtcagacaaggcggtcacgccgcatccgacatccaacgcccgagccggttgcctgatgcgacgctggcgcg                                        >  1:142039‑M1/1‑5 (MQ=255)                                                                                                                                                cAGGCctacaccgctgtgaagtgcggcaccccgtaggtcagacaaggcggtcacgccgcatccgacatccaacgcccgagccggttgcctgatgcgacgctggcgcg                                        <  2:142039‑M1/107‑103 (MQ=255)                                                                                                                                                   gCctacaccgctgtgaagtgcggcaccccgtaggtcagacaaggcggtcacgccgcatcc                                                                                    <  2:568437‑M1/60‑59 (MQ=255)                                                                                                                                                   gCctacaccgctgtgaagtgcggcaccccgtaggtcagacaaggcggtcacgccgcatcc                                                                                    >  1:568437‑M1/1‑2 (MQ=255)                                                                                                                                                    cctacaccgctgtgaagtgcggcaccccgtaggtcagacaaggcggtcacgccgcatccgacatccaacgcccgagccggttgcctgataagacgcgc                                             >  2:170590‑M1/1‑1 (MQ=255)                                                                                                                                                    cctacaccgctgtgaagtgcggcaccccgtaggtcagacaaggcggtcacgccgcatccgacatccaacgcccgagccggttgcctgataagacgcgc                                             <  1:170590‑M1/98‑98 (MQ=255)                                                                                                                                                    |                                                                                                                                             CTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCA  >  NC_000913/66580‑66867

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.