New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 248210	34 (0.360)	4 (0.050)	4/186	NT	12.8%	noncoding (64/188 nt)	REP19 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP19 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913	= 248226	23 (0.260)					noncoding (80/188 nt)	REP19 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP19 (repetitive extragenic palindromic) element; contains 4 REP sequences

AGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGA  >  NC_000913/248065‑248354                                                                                                                                                  |                                                                                                                                                 aGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATaa                                                                                                                                                <  1:512261/148‑1 (MQ=255)    gTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGc                                                                                                                                             <  1:72306/148‑1 (MQ=255)      tataTCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATaa                                                                                                                                                <  2:77092/143‑1 (MQ=255)      tataTCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATaa                                                                                                                                                >  1:77092/1‑143 (MQ=255)             cATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTAt                                                                                                                                       >  4:541451/1‑145 (MQ=255)             cATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTAt                                                                                                                                       <  3:541451/145‑1 (MQ=255)                                    cGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGc                                                                                                                                     >  4:1068510/1‑124 (MQ=255)                                    cGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGc                                                                                                                                     <  3:1068510/124‑1 (MQ=255)                                                           aTCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCg                                                                                                                                            <  2:83657/94‑1 (MQ=255)                                                           aTCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCg                                                                                                                                            >  1:83657/1‑94 (MQ=255)                                                             cATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGt                                                                                                                                           <  2:583677/93‑1 (MQ=255)                                                             cATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGt                                                                                                                                           >  1:583677/1‑93 (MQ=255)                                                                              cAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGt                                                                                                                                           <  2:166747/76‑1 (MQ=255)                                                                              cAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGt                                                                                                                                           >  1:166747/1‑76 (MQ=255)                                                                                      tGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTa                                                                                                                      >  4:535689/1‑89 (MQ=255)                                                                                      tGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTa                                                                                                                      <  3:535689/89‑1 (MQ=255)                                                                                             aCGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGtt                                                                                                                       >  1:675707/1‑81 (MQ=255)                                                                                             aCGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGtt                                                                                                                       <  2:675707/81‑1 (MQ=255)                                                                                                cTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATgcggcataaacgccttatccgg                                                                                                                            <  2:512717‑M1/73‑23 (MQ=255)                                                                                                cTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATgcggcataaacgccttatccgg                                                                                                                            >  1:512717‑M1/1‑51 (MQ=255)                                                                                                             tCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATgcggcataaacgccttatccg                                                                                                                             <  3:838666‑M1/59‑22 (MQ=255)                                                                                                             tCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATgcggcataaacgccttatccg                                                                                                                             >  4:838666‑M1/1‑38 (MQ=255)                                                                                                                tGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGCCGCatccggc                                                                                                                           >  4:809233‑M2/1‑51 (MQ=255)                                                                                                                tGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGCCGCatccggc                                                                                                                           <  3:809233‑M2/58‑8 (MQ=255)                                                                                                                tGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTa                                                                                                                      >  1:512854/1‑63 (MQ=255)                                                                                                                tGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTa                                                                                                                      <  2:512854/63‑1 (MQ=255)                                                                                                                tGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGgcg                                                                                          <  3:1138393/91‑1 (MQ=255)                                                                                                                tGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGgcg                                                                                          >  4:1138393/1‑91 (MQ=255)                                                                                                                tGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCt                                                                                     <  3:287509/96‑1 (MQ=255)                                                                                                                tGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCt                                                                                     >  4:287509/1‑96 (MQ=255)                                                                                                                    tACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTc                                                                                      <  1:1002948/91‑1 (MQ=255)                                                                                                                    tACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTc                                                                                      >  2:1002948/1‑91 (MQ=255)                                                                                                                     aCAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGc                                                                                                                                     <  2:504270/43‑1 (MQ=255)                                                                                                                     aCAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGc                                                                                                                                     >  1:504270/1‑43 (MQ=255)                                                                                                                     aCAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGa                                                                                                       >  2:1089435/1‑73 (MQ=255)                                                                                                                     aCAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGa                                                                                                       <  1:1089435/73‑1 (MQ=255)                                                                                                                                   gATCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCt                                                                           >  2:22572/1‑87 (MQ=255)                                                                                                                                   gATCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCt                                                                           <  1:22572/87‑1 (MQ=255)                                                                                                                                   gATCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTa                                                     <  2:1037823/109‑1 (MQ=255)                                                                                                                                   gATCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTa                                                     >  1:1037823/1‑109 (MQ=255)                                                                                                                                    aTCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGc                                                                             <  2:231010/84‑1 (MQ=255)                                                                                                                                    aTCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGc                                                                             >  1:231010/1‑84 (MQ=255)                                                                                                                                    aTCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCa                     <  3:358372/140‑1 (MQ=255)                                                                                                                                    aTCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCa                     >  4:358372/1‑140 (MQ=255)                                                                                                                                            gCCGGATgcggcataaacgccttatccggcctaccgatccggcacaagtttgtaggca                                                                                               <  3:809233‑M1/58‑52 (MQ=255)                                                                                                                                            gCCGGATgcggcataaacgccttatccggcctaccgatccggcacaagtttgtaggca                                                                                               >  4:809233‑M1/1‑7 (MQ=255)                                                                                                                                             ccGGATAAGGCGTTTATGCCGCatccggcctaccgatccggcacaagtttgtaggcatgataagacgcgctag                                                                               <  2:512717‑M2/73‑52 (MQ=255)                                                                                                                                             ccGGATAAGGCGTTTATGCCGCatccggcctaccgatccggcacaagtttgtaggcatgataagacgcgctag                                                                               >  1:512717‑M2/1‑22 (MQ=255)                                                                                                                                              cGGATAAGGCGTTTATGCCGCatccggcctaccgatccggcacaagtttgtaggcatga                                                                                            <  3:838666‑M2/59‑39 (MQ=255)                                                                                                                                              cGGATAAGGCGTTTATGCCGCatccggcctaccgatccggcacaagtttgtaggcatga                                                                                            >  4:838666‑M2/1‑21 (MQ=255)                                                                                                                                               ggATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGa  >  2:1076064/1‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                                 AGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGA  >  NC_000913/248065‑248354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.