New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 82061236 (0.390)12 (0.140) 9/188 NT 25.0% intergenic (+24/‑181) ybhL/ybhM putative acetate transporter; BAX Inhibitor‑1 family inner membrane protein/BAX Inhibitor‑1 family inner membrane protein
?NC_000913 = 820621 38 (0.430)intergenic (+33/‑172) ybhL/ybhM putative acetate transporter; BAX Inhibitor‑1 family inner membrane protein/BAX Inhibitor‑1 family inner membrane protein

AACCTGCGCAAATATTCCATTCTTGGCGCGTTAACCTTGTATCTGGACTTCATCAACCTGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAA  >  NC_000913/820490‑820744
                                                                                                                          |                                                                                                                                    
aaCCTGCGCAAATATTCCATTCTTGGCGCGTTAACCTTGTATCTGGACTTCATCAACCTGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGacacatggccgggat                                                                                                                       <  1:215384‑M1/138‑16 (MQ=255)
aaCCTGCGCAAATATTCCATTCTTGGCGCGTTAACCTTGTATCTGGACTTCATCAACCTGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGacacatggccgggat                                                                                                                       >  2:215384‑M1/1‑123 (MQ=255)
    tGCGCAAATATTCCATTCTTGGCGCGTTAACCTTGTATCTGGACTTCATCAACCTGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGacacatggccgggata                                                                                                                      <  4:94136‑M1/135‑17 (MQ=255)
    tGCGCAAATATTCCATTCTTGGCGCGTTAACCTTGTATCTGGACTTCATCAACCTGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGacacatggccgggata                                                                                                                      >  3:94136‑M1/1‑119 (MQ=255)
                              ttAACCTTGTATCTGGACTTCATCAACCTGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGcc                                                                                                                                   <  1:165387/96‑1 (MQ=255)
                              ttAACCTTGTATCTGGACTTCATCAACCTGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTaaaaa                                                                                                      >  4:391742/1‑125 (MQ=255)
                              ttAACCTTGTATCTGGACTTCATCAACCTGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTaaaaa                                                                                                      <  3:391742/125‑1 (MQ=255)
                              gtAACCTTGTATCTGGACTTCATCAACCTGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGcc                                                                                                                                   >  2:165387/2‑96 (MQ=255)
                                   cTTGTATCTGGACTTCATCAACCTGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTaaaa                                                                                                       >  4:273837/1‑119 (MQ=255)
                                   cTTGTATCTGGACTTCATCAACCTGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTaaaa                                                                                                       <  3:273837/119‑1 (MQ=255)
                                          cTGGACTTCATCAACCTGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCa                                                                                                                                  >  1:1048748/1‑85 (MQ=255)
                                          cTGGACTTCATCAACCTGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCa                                                                                                                                  <  2:1048748/85‑1 (MQ=255)
                                          cTGGACTTCATCAACCTGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTaaaa                                                                                                       <  4:98068/112‑1 (MQ=255)
                                          cTGGACTTCATCAACCTGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTGACTaaaa                                                                                                       >  3:98068/1‑112 (MQ=255)
                                            ggACTTCATCAACCTGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCgg                                                                                                                                     >  2:459872/1‑80 (MQ=255)
                                            ggACTTCATCAACCTGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCgg                                                                                                                                     <  1:459872/80‑1 (MQ=255)
                                                ttCATCAACCTGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGAtttttt                                                                                                                  <  2:988343/95‑1 (MQ=255)
                                                ttCATCAACCTGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGAtttttt                                                                                                                  >  1:988343/1‑95 (MQ=255)
                                                          tGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACt                                                                                               >  1:209984/1‑104 (MQ=255)
                                                          tGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACt                                                                                               <  2:209984/104‑1 (MQ=255)
                                                             tCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGc                                                                                                                                    <  1:443572/64‑1 (MQ=255)
                                                             tCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGc                                                                                                                                    >  2:443572/1‑64 (MQ=255)
                                                             tCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACt                                                                                               >  2:197539/1‑101 (MQ=255)
                                                             tCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACt                                                                                               <  1:197539/101‑1 (MQ=255)
                                                                tGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGacacatggccgggata                                                                                                                      <  1:260619‑M1/75‑17 (MQ=255)
                                                                tGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGacacatggccgggata                                                                                                                      >  2:260619‑M1/1‑59 (MQ=255)
                                                                tGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGacacatggccggg                                                                                                                         <  4:669414‑M1/72‑14 (MQ=255)
                                                                tGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTaaaa                                                                                                       <  4:382938/90‑1 (MQ=255)
                                                                tGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTaaaa                                                                                                       >  3:382938/1‑90 (MQ=255)
                                                                tGATGTTGTTCCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGacacatggccggg                                                                                                                         >  3:669414‑M1/1‑59 (MQ=255)
                                                                 gATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGacacatggccggg                                                                                                                         >  1:865616‑M1/1‑58 (MQ=255)
                                                                 gATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGacacatggccggg                                                                                                                         <  2:865616‑M1/71‑14 (MQ=255)
                                                                      tgttgCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGacacatggccgggatag                                                                                                                     <  2:198836‑M1/70‑18 (MQ=255)
                                                                      tgttgCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGacacatggccgggatag                                                                                                                     >  1:198836‑M1/1‑53 (MQ=255)
                                                                      tgttgCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTaa                                                                                            >  4:546436/1‑95 (MQ=255)
                                                                      tgttgCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTaa                                                                                            <  3:546436/95‑1 (MQ=255)
                                                                             gATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGac                                                                                                  >  4:421252/1‑82 (MQ=255)
                                                                             gATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGac                                                                                                  <  3:421252/82‑1 (MQ=255)
                                                                             gATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAg                                                         >  1:451413/1‑123 (MQ=255)
                                                                             gATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAg                                                         <  2:451413/123‑1 (MQ=255)
                                                                                    ggCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCa                                                                                   <  3:58292/90‑1 (MQ=255)
                                                                                    ggCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCa                                                                                   >  4:58292/1‑90 (MQ=255)
                                                                                              gTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTa               >  1:811211/1‑148 (MQ=255)
                                                                                              gTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTa               <  2:811211/148‑1 (MQ=255)
                                                                                                    tCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGtt                                               >  3:398385/1‑110 (MQ=255)
                                                                                                    tCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGtt                                               <  4:398385/110‑1 (MQ=255)
                                                                                                       ttttCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAg                                                         >  3:158490/1‑97 (MQ=255)
                                                                                                       ttttCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAg                                                         <  4:158490/97‑1 (MQ=255)
                                                                                                           cACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATgg                                                              >  3:28949/1‑88 (MQ=255)
                                                                                                           cACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATgg                                                              <  4:28949/88‑1 (MQ=255)
                                                                                                               aTCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAGCGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTc                                            <  1:916265/102‑1 (MQ=255)
                                                                                                               aTCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACACGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTc                                            >  2:916265/1‑102 (MQ=255)
                                                                                                                tCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGa                                                     >  3:487069/1‑92 (MQ=255)
                                                                                                                tCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGa                                                     <  4:487069/92‑1 (MQ=255)
                                                                                                                   cTATCCCGGCCATGTGTcgggatagtgatggtgaaaaagaattaacggcggttgccgaagatccgcaaca                                                                        <  2:198836‑M2/70‑54 (MQ=255)
                                                                                                                   cTATCCCGGCCATGTGTcgggatagtgatggtgaaaaagaattaacggcggttgccgaagatccgcaaca                                                                        >  1:198836‑M2/1‑17 (MQ=255)
                                                                                                                    tATCCCGGCCATGTGTcgggatagtgatggtgaaaaagaattaacggcggttgccgaagatccgcaacaacatcaggaacaggttgatgaagtccagatacaaggttaacgcgccaagaatggaatatttgcgca      <  4:94136‑M2/135‑120 (MQ=255)
                                                                                                                    tATCCCGGCCATGTGTcgggatagtgatggtgaaaaagaattaacggcggttgccgaagatccgcaacaacatcaggaacaggttgatgaagtccagatacaaggttaacgcgccaagaatggaatatttgcgca      >  3:94136‑M2/1‑16 (MQ=255)
                                                                                                                    tATCCCGGCCATGTGTcgggatagtgatggtgaaaaagaattaacggcggttgccgaagatccgcaacaacatca                                                                  >  2:260619‑M2/1‑16 (MQ=255)
                                                                                                                    tATCCCGGCCATGTGTcgggatagtgatggtgaaaaagaattaacggcggttgccgaagatccgcaacaacatca                                                                  <  1:260619‑M2/75‑60 (MQ=255)
                                                                                                                    tATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGtttt                                             <  4:228682/96‑1 (MQ=255)
                                                                                                                    tATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGtttt                                             >  3:228682/1‑96 (MQ=255)
                                                                                                                     aTCCCGGCCATGTGTcgggatagtgatggtgaaaaagaattaacggcggttgccgaagatccgcaacaacatcaggaacaggttgatgaagtccagatacaaggttaacgcgccaagaatggaatatttgcgcaggtt  <  1:215384‑M2/138‑124 (MQ=255)
                                                                                                                     aTCCCGGCCATGTGTcgggatagtgatggtgaaaaagaattaacggcggttgccgaagatccgcaacaacatcaggaacaggttgatgaagtccagatacaaggttaacgcgccaagaatggaatatttgcgcaggtt  >  2:215384‑M2/1‑15 (MQ=255)
                                                                                                                       cccGGCCATGTGTcgggatagtgatggtgaaaaagaattaacggcggttgccgaagatccggaacaacatca                                                                  >  3:669414‑M2/1‑13 (MQ=255)
                                                                                                                       cccGGCCATGTGTcgggatagtgatggtgaaaaagaattaacggcggttgccgaagatccgcaacaacatca                                                                  <  4:669414‑M2/72‑60 (MQ=255)
                                                                                                                       cccGGCCATGTGTcgggatagtgatggtgaaaaagaattaacggcggttgccgaagatccgcaacaacatc                                                                   >  1:865616‑M2/1‑13 (MQ=255)
                                                                                                                       cccGGCCATGTGTcgggatagtgatggtgaaaaagaattaacggcggttgccgaagatccgcaacaacatc                                                                   <  2:865616‑M2/71‑59 (MQ=255)
                                                                                                                       cccGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACg                                                                                                    <  3:761214/38‑1 (MQ=255)
                                                                                                                       cccGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACg                                                                                                    >  4:761214/1‑38 (MQ=255)
                                                                                                                       cccGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTa                                                                 <  3:634331/73‑1 (MQ=255)
                                                                                                                       cccGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTa                                                                 >  4:634331/1‑73 (MQ=255)
                                                                                                                          |                                                                                                                                    
AACCTGCGCAAATATTCCATTCTTGGCGCGTTAACCTTGTATCTGGACTTCATCAACCTGTTCCTGATGTTGTTGCGGATCTTCGGCAACCGCCGTTAATTCTTTTTCACCATCACTATCCCGGCCATGTGTCGGGATTTTTTTCTTACTAAAAACGACACTTAACAAGTACCAGGTATAAAATATGCCTTATGGACGAGCGGAAGCGTTTTCTGTATCCATAAATGCAAAAGTATTTTGTATGCGTGGTTTTAA  >  NC_000913/820490‑820744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.