New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1269276 =	24 (0.260)	6 (0.070)	4/184	NT	16.2%	intergenic (‑1/‑47)	ldrA/rdlA	toxic polypeptide, small/sRNA antisense regulator affects LdrA translation; proposed addiction module in LDR‑A repeat, with toxic peptide LdrA
	?	NC_000913	1269849 =	40 (0.470)					intergenic (‑39/‑9)	ldrB/rdlB	toxic polypeptide, small/sRNA antisense regulator affects LdrB translation; proposed addiction module in LDR‑B repeat, with toxic peptide LdrB

GGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTGTACCTCTCAACGTGCGGGGGTTTTCTCTTTCCAGCAACCAATGCCACCAGGGATAAAGCCC  >  NC_000913/1269176‑1269423                                                                                                     |                                                                                                                                                    cctggtggcattggttgctggaaagagaaaacccccgcacgttgagaggtaaaacctgacaacagaacgggggctaatcttgaaaccagacacttcaagaATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTAt                                                                                                                <  1:224310‑M1/38‑1 (MQ=255) cctggtggcattggttgctggaaagagaaaacccccgcacgttgagaggtaaaacctgacaacagaacgggggctaatcttgaaaccagacacttcaagaATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTAt                                                                                                                >  2:224310‑M1/101‑138 (MQ=255)                tGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTGGTTCAAGAtt                                                                                       <  1:1115103/148‑1 (MQ=255)                        agagaaaacccccgcacgttgagaggtaaaacctgacaacagaacgggggctaatcttgaaaccagacacttcaagaATAGCCGCCTTGTTGTAATGACAACATTTTGCg                                                                                                                     <  4:787281‑M1/33‑1 (MQ=255)                        agagaaaacccccgcacgttgagaggtaaaacctgacaacagaacgggggctaatcttgaaaccagacacttcaagaATAGCCGCCTTGTTGTAATGACAACATTTTGCg                                                                                                                     >  3:787281‑M1/78‑110 (MQ=255)                        agagaaaacccccgcacgttgagaggtaaaacctgacaacaaaacgggggctaatcttgaaaccagacacttcaagaATAGCCGCCTTGTTGTAATGACAACATTTTg                                                                                                                       >  4:1077224‑M1/78‑108 (MQ=255)                        agagaaaacccccgcacgttgagaggtaaaacctgacaacaaaacgggggctaatcttgaaaccagacacttcaagaAGAGCCACCTTGTTGTAATGACAACATTTTg                                                                                                                       <  3:1077224‑M1/31‑1 (MQ=255)                             aaacccccgcacgttgagaggtaaaacctgacaacagaacgggggctaatcttgaaaccagacacttcaagaAt                                                                                                                                                    >  1:899719‑M1/73‑74 (MQ=255)                             aaacccccgcacgttgagaggtaaaacctgacaacagaacgggggctaatcttgaaaccagacacttcaagaAt                                                                                                                                                    <  2:899719‑M1/2‑1 (MQ=255)                              gTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTgg                                                                                                <  4:354400/125‑1 (MQ=37)                              gTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTgg                                                                                                >  3:354400/1‑125 (MQ=37)                               taataaTTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTg                                                                                                 <  4:791324/123‑1 (MQ=37)                               taataaTTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTg                                                                                                 >  3:791324/1‑123 (MQ=35)                                aataatTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTc                                                                                                   <  4:867365/120‑1 (MQ=35)                                aataatTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTc                                                                                                   >  3:867365/1‑120 (MQ=35)                                              ggATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTGTACctc                                                         >  4:95744/1‑148 (MQ=255)                                               gATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGt                                                                                                     <  1:343165/103‑1 (MQ=32)                                               gATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGt                                                                                                     >  2:343165/1‑103 (MQ=32)                                                 tCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTGGTTCAAGATTAGcccc                                                                                 >  1:1102705/1‑121 (MQ=255)                                                 tCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTGGTTCAAGATTAGcccc                                                                                 <  2:1102705/121‑1 (MQ=255)                                                  caaaacctgacaacagaacgggggctaatcttgaatccagacacttcaagaATAg                                                                                                                                                  >  3:510716‑M1/52‑55 (MQ=255)                                                  caaaacctgacaacagaacgggggctaatcttgaaaccagacacttcaagaATAg                                                                                                                                                  <  4:510716‑M1/4‑1 (MQ=255)                                                       ctgcCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTGTACCTCTCAACGTGc                                                <  3:95744/148‑1 (MQ=255)                                                                        aaaaTCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTGGTTCAAGATTAGCCCCCGTTCTGTTGTCAgg                                                                  <  3:1016675/113‑1 (MQ=255)                                                                        aaaaTCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTGGTTCAAGATTAGCCCCCGTTCTGTTGTCAgg                                                                  >  4:1016675/1‑113 (MQ=255)                                                                         aaaTCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTGGTTCAAGATTAGCCCCCGTTc                                                                            <  3:401191/102‑1 (MQ=255)                                                                         aaaTCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTGGTTCAAGATTAGCCCCCGTTc                                                                            >  4:401191/1‑102 (MQ=255)                                                                                ggCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTGTACCTCTCAACGTGCGGGGGTTTTCTCTTTcc                               <  3:437237/140‑1 (MQ=255)                                                                                ggCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTGTACCTCTCAACGTGCGGGGGTTTTCTCTTTcc                               >  4:437237/1‑140 (MQ=255)                                                                                            gAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTGGTTCAAg                                                                                          >  1:373964/1‑69 (MQ=255)                                                                                            gAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTGGTTCAAGATTAGCCCCCGTTCTGTTGTCAgg                                                                  <  2:1087939/93‑1 (MQ=255)                                                                                            gAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTGGTTCAAGATTAGCCCCCGTTCTGTTGTCAgg                                                                  >  1:1087939/1‑93 (MQ=255)                                                                                            gAGCGTCATATAGCCGCCTTGTTGTAATGACAACAGTTTGCGGCTATTCTTGAATTGTTCTGGTTCTAg                                                                                          <  2:373964/69‑1 (MQ=255)                                                                                             aGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTGTACCTCTCAACGTGCGGGGGTTTTCTCTTTCCAGCAACCAATGCCACCAGGGa          >  2:423050/1‑148 (MQ=255)                                                                                                    tataGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTGTACCTCTCAACGTGCGGGGGTTTTCTCttt                                 >  1:847640/1‑118 (MQ=255)                                                                                                    tataGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTGTACCTCTCAACGTGCGGGGGTTTTCTCttt                                 <  2:847640/118‑1 (MQ=255)                                                                                                     ATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTGTACCTCTCAACGTGCGGGGGTTTTCTCTTTCCAGCAACCAATGCCACCAGGGATAAAgccg  >  1:423050‑M1/1‑147 (MQ=255)                                                                                                     |                                                                                                                                                    GGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTTCTGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTGTACCTCTCAACGTGCGGGGGTTTTCTCTTTCCAGCAACCAATGCCACCAGGGATAAAGCCC  >  NC_000913/1269176‑1269423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.