| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1405665 = | 35 (0.370) | 8 (0.090) | 8/182 | NT | 20.3% | noncoding (87/96 nt) | mcaS | motility and biofilm regulator sRNA |
| ? | NC_000913 | 1405694 = | 31 (0.360) | noncoding (58/96 nt) | mcaS | motility and biofilm regulator sRNA | |||||
ATGTTGCCGGTTAGCGAAATTTTACCGAAAGCGGCCTATTATTTGATTCAGCGGCGTGATAGTCGCCAGACACCACTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCTTAAATCCGGCATTGTCTCCTCTGCGCCGGTGACTGTGTTATAACGGTTTTAACCTTTAGTTGCCAATTTTCTTCAGTG > NC_000913/1405518‑1405799 | aTGTTGCCGGTTAGCGAAATTTTACCGAAAGCGGCCTATTATTTGATTCAGCGGCGTGATAGTCGCCAGACACCACTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAAt < 3:560398/148‑1 (MQ=255) tttACCGAAAGCGGCCTATTATTTGATTCAGCGGCGTGATAGTCGCCAGACACCACTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAAt > 2:413224/1‑128 (MQ=255) tttACCGAAAGCGGCCTATTATTTGATTCAGCGGCGTGATAGTCGCCAGACACCACTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAAt < 1:413224/128‑1 (MQ=255) ccTATTATTTGATTCAGCGGCGTGATAGTCGCCAGACACCACTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTac > 1:181171/1‑148 (MQ=255) tattatTTGATTCAGCGGCGTGATAGTCGCCAGACACCACTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGt < 4:427668/121‑1 (MQ=255) tattatTTGATTCAGCGGCGTGATAGTCGCCAGACACCACTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGt > 3:427668/1‑121 (MQ=255) attattTGATTCAGCGGCGTGATAGTCGCCAGACACCACTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGAct < 4:65473/136‑1 (MQ=255) attattTGATTCAGCGGCGTGATAGTCGCCAGACACCACTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGAct > 3:65473/1‑136 (MQ=255) ttGATTCAGCGGCGTGATAGTCGCCAGACACCACTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATagag > 2:628202/1‑110 (MQ=255) ttGATTCAGCGGCGTGATAGTCGCCAGACACCACTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATagag < 1:628202/110‑1 (MQ=255) tGATTCAGCGGCGTGATAGTCGCCAGACACCACTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACAcagcag < 2:181171/148‑1 (MQ=255) tgaagaaaattggcaactaaaggttaaaaccgttataacacagtcaccggcgcagaggagacaatgccggatttaagacgcggatgcactgctgtgtgtactgTAGAGTCTGTCGACATCCGCCAGAc < 2:990851‑M1/25‑1 (MQ=255) tgaagaaaattggcaactaaaggttaaaaccgttataacacagtcaccggcgcagaggagacaatgccggatttaagacgcggatgcactgctgtgtgtactgTAGAGTCTGTCGACATCCGCCAGAc > 1:990851‑M1/104‑128 (MQ=255) tCAGCGGCGTGATAGTCGCCAGACACCACTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAAt < 2:414259/101‑1 (MQ=255) tCAGCGGCGTGATAGTCGCCAGACACCACTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAAt > 1:414259/1‑101 (MQ=255) agaaaattggcaactaaaggttaaaaccgttataacacagtcaccggcgcagaggagacaatgccggatttaagacgcggatgcactgctgtgtgtactgTag > 1:1096128‑M1/101‑103 (MQ=255) agaaaattggcaactaaaggttaaaaccgttataacacagtcaccggcgcagaggagacaatgccggatttaagacgcggatgcactgctgtgtgtactgTag < 2:1096128‑M1/3‑1 (MQ=255) gcggcgTGATAGTCGCCAGACACCACTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATcc > 1:1091647/1‑148 (MQ=255) cgTGATAGTCGCCAGACACCACTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGt < 2:1091647/148‑1 (MQ=255) gttaaaaccgttataacacagtcaccggcgcagaggagacaatgccggatttaagacgcggatgcactgctgtgtgtactgTAGAGTCTGTCGACATCCGCCAGa < 3:603196‑M1/24‑1 (MQ=255) gttaaaaccgttataacacagtcaccggcgcagaggagacaatgccggatttaagacgcggatgcactgctgtgtgtactgTAGAGTCTGTCGACATCCGCCAGa > 4:603196‑M1/82‑105 (MQ=255) gACACCACTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGt > 3:1088413/1‑112 (MQ=255) gACACCACTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGt < 4:1088413/112‑1 (MQ=255) ccacTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCTTAAATc > 2:891919/1‑138 (MQ=255) ccacTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCTTAAATc < 1:891919/138‑1 (MQ=255) acTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCcgcg > 1:142464/1‑127 (MQ=255) acTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCcgcg < 2:142464/127‑1 (MQ=255) tGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAAt > 1:967847/1‑72 (MQ=255) tGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAAt < 2:967847/72‑1 (MQ=255) ccGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAAt > 3:884945/1‑69 (MQ=255) ccGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAAt < 4:884945/69‑1 (MQ=255) cgTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCGGCGTCTTAAATCCGGc > 4:544978/1‑132 (MQ=255) cgTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCGGCGTCTTAAATCCGGc < 3:544978/132‑1 (MQ=255) cgTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCTTAAATCCGGCATTGTCTCCTCTgcgc > 3:395928/1‑148 (MQ=255) cacagtcaccggcgcagaggagacaatgccggatttaagacgcggatgcactgctgtgtgtactgTAGAGTCTGTCGACATCCGCCAGACTCTAc < 3:722441‑M1/30‑1 (MQ=255) cacagtcaccggcgcagaggagacaatgccggatttaagacgcggatgcactgctgtgtgtactgTAGAGTCTGTCGACATCCGCCAGACTCTAc > 4:722441‑M1/66‑95 (MQ=255) ttAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCTTAAATCCGGCATTGTCTCCTCTGCGCCGGTg > 2:70950/1‑148 (MQ=255) caccggcgcagaggagacaatgccggatttaagacgcggatgcactgctgtgtgtactgt > 1:357616‑M1/60‑60 (MQ=255) caccggcgcagaggagacaatgccggatttaagacgcggatgcactgctgtgtgtactgt < 2:357616‑M1/1‑1 (MQ=255) tCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCTTAAATCCGGCATTGTCTCCTCTGCGCCGGTGACtg < 1:70950/148‑1 (MQ=255) cGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAg < 3:773481/76‑1 (MQ=255) cGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCt < 1:396983/110‑1 (MQ=255) cGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCt > 2:396983/1‑110 (MQ=255) cGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCTTAAATCCGGCATTGTCTCCTCTGCGCCGGTGACTgtgt > 2:411545/1‑148 (MQ=255) cGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGGTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAg > 4:773481/1‑76 (MQ=255) aTTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCTTAAATCCGGCATTGTCTCCTCTGCGCCGGTGACTGTGTtata < 1:411545/148‑1 (MQ=255) aTTCCGGCGAGAATGCGGCTATCCGCAAAGTTAAAACTGCATAAAAAAATag > 1:955353/1‑52 (MQ=255) aTTCCGACGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATag < 2:955353/52‑1 (MQ=255) cggatttaagacgcggatgcactgctgtgtgtactgTAGAGTCTGTCGACATCCGcc < 2:307601‑M1/21‑1 (MQ=255) cggatttaagacgcggatgcactgctgtgtgtactgTAGAGTCTGTCGACATCCGcc > 1:307601‑M1/37‑57 (MQ=255) gCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCTTAAATCCGGCATTGTCTCCTCTGCGCCGGTGACtgtg < 1:354869/126‑1 (MQ=255) gCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCTTAAATCCGGCATTGTCTCCTCTGCGCCGGTGACtgtg > 2:354869/1‑126 (MQ=255) cTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCTTAAATCCGGCATTGTCTCCTCTGCGCCGGTg > 1:554952/1‑115 (MQ=255) cTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCTTAAATCCGGCATTGTCTCCTCTGCGCCGGTg < 2:554952/115‑1 (MQ=255) cAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGAc > 1:601097/1‑49 (MQ=255) cAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGAc < 2:601097/49‑1 (MQ=255) cAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCTTAAATCCGGCATTGTCTCCTCTGCGCCGGTGACTGTGTTATAACgg > 1:243336/1‑127 (MQ=255) cAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCTTAAATCCGGCATTGTCTCCTCTGCGCCGGTGACTGTGTTATAACgg < 2:243336/127‑1 (MQ=255) ttAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCTTAAATCCGGCATTGTCTCCTCTGCGCCGGTGACTGTGTTATAACGGTTTTAACCTTTAGTTGCCAATTttct < 4:395928/148‑1 (MQ=255) cTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCTTAAATCCGGCATTGTCTCCTCTGCGCCGGTGACTGTGTTATAACGGTTTTAACCTTTAGTTGCCAATTTTCTTCAGTg > 1:843559/1‑148 (MQ=255) aaaaaTAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCTTAAATCCGGCAtt > 3:760049/1‑75 (MQ=255) aaaaaTAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCTTAAATCCGGCAtt < 4:760049/75‑1 (MQ=255) aaTAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCTTAAATCCGGCATTGTCTCCTCTGCGCCGGTGACTGTGTTATAACGGTTTTAACCTTTAGTTGCCAAttt > 3:882815/1‑128 (MQ=255) aaTAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCTTAAATCCGGCATTGTCTCCTCTGCGCCGGTGACTGTGTTATAACGGTTTTAACCTTTAGTTGCCAAttt < 4:882815/128‑1 (MQ=255) | ATGTTGCCGGTTAGCGAAATTTTACCGAAAGCGGCCTATTATTTGATTCAGCGGCGTGATAGTCGCCAGACACCACTGACCGCGTCATTAATCACGCAATTCCGGCGAGAATGCGGCTATCTGCAAAGTTAAAACTGCATAAAAAAATAGAGTCTGTCGACATCCGCCAGACTCTACAGTACACACAGCAGTGCATCCGCGTCTTAAATCCGGCATTGTCTCCTCTGCGCCGGTGACTGTGTTATAACGGTTTTAACCTTTAGTTGCCAATTTTCTTCAGTG > NC_000913/1405518‑1405799 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |