| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1484624 = | 51 (0.550) | 6 (0.070) | 6/192 | NT | 9.7% | coding (1564/3903 nt) | hrpA | putative ATP‑dependent helicase |
| ? | NC_000913 | 1484660 = | 63 (0.700) | coding (1600/3903 nt) | hrpA | putative ATP‑dependent helicase | |||||
GAACAGGCCAGCGCCTATAAACTGACGCCGCTCGGTCGCCAGCTCTCGCAGTTGCCTGTCGACCCACGTCTGGCGCGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAGAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTG > NC_000913/1484495‑1484756 | ggcgttggaagaaagcgccttttgctgctcgccaagataattccacagattcacaaacgcgagaaagtcagactctttgtcgtggaagcgacgatgtttttcgtccgatgcctgctgtttgtccatcggACGTCCGCGCTCTCCATTc < 3:1110622‑M1/19‑1 (MQ=255)gaACAGGCCAGCGCCTATAAACTGACGCCGCTCGGTCGCCAGCTCTCGCAGTTGCCTGTCGACCCACGTCTGGCGCGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTc < 4:637237/148‑1 (MQ=255) agcgccttttgctgctcgccaagataattccacagattcacaaacgcgagaaagtcagactctttgtcgtggaagcgacgatgtttttcgtccgatgcctgctgtttgtccatcggACGTCCGCGCTCTCCATTCAGGATCCGCGCGa > 4:1110622‑M1/117‑148 (MQ=255) ataAACTGACGCCGCTCGGTCGCCAGCTCTCGCAGTTGCCTGTCGACCCACGTCTGGCGCGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCa < 4:1930/133‑1 (MQ=255) ataAACTGACGCCGCTCGGTCGCCAGCTCTCGCAGTTGCCTGTCGACCCACGTCTGGCGCGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCa > 3:1930/1‑133 (MQ=255) cTGACGCCGCTCGGTCGCCAGCTCTCGCAGTTGCCTGTCGACCCACGTCTGGCGCGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAgg > 3:926917/1‑130 (MQ=255) cTGACGCCGCTCGGTCGCCAGCTCTCGCAGTTGCCTGTCGACCCACGTCTGGCGCGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAgg < 4:926917/130‑1 (MQ=255) cTCGGTCGCCAGCTCTCGCAGTTGCCTGTCGACCCACGTCTGGCGCGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAAc > 4:861271/1‑148 (MQ=255) ggTCGCCAGCTCTCGCAGTTGCCTGTCGACCCACGTCTGGCGCGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAAcagc < 3:861271/148‑1 (MQ=255) ctcGCAGTTGCCTGTCGACCCACGTCTGGCGCGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCg > 1:623656/1‑124 (MQ=255) ctcGCAGTTGCCTGTCGACCCACGTCTGGCGCGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCg < 2:623656/124‑1 (MQ=255) ctcGCAGTTGCCTGTCGACCCACGTCTGGCGCGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAAcag > 1:359826/1‑136 (MQ=255) ctcGCAGTTGCCTGTCGACCCACGTCTGGCGCGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAAcag < 2:359826/136‑1 (MQ=255) acagattcacaaacgcgagaaagtcagactctttgtcgtggaagcgacgatgtttttcgtccgatgcctgctgtttgtccatcggACg > 1:576229‑M1/86‑88 (MQ=255) acagattcacaaacgcgagaaagtcagactctttgtcgtggaagcgacgatgtttttcgtccgatgcctgctgtttgtccatcggACg < 2:576229‑M1/3‑1 (MQ=255) cGCAGTTGCCTGTCGACCCACGTCTGGCGCGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGt < 4:663462/119‑1 (MQ=255) cGCAGTTGCCTGTCGACCCACGTCTGGCGCGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGt > 3:663462/1‑119 (MQ=255) cAGTTGCCTGTCGACCCACGTCTGGCGCGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGt > 3:8704/1‑117 (MQ=255) cAGTTGCCTGTCGACCCACGTCTGGCGCGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGt < 4:8704/117‑1 (MQ=255) ttcacaaacgcgagaaagtcagactctttgtcgtggaagcgacgatgtttttcgtccgatgcctgctgtttgtccatcggACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGt > 4:315717‑M1/81‑116 (MQ=255) ttcacaaacgcgagaaagtcagactctttgtcgtggaagcgacgatgtttttcgtccgatgcctgctgtttgtccatcggACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGt < 3:315717‑M1/36‑1 (MQ=255) tGTCGACCCACGTCTGGCGCGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATgg > 3:639810/1‑116 (MQ=255) tGTCGACCCACGTCTGGCGCGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATgg < 4:639810/116‑1 (MQ=255) tCGACCCACGTCTGGCGCGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCACGCTCTCCATTCAGGATCcg > 3:582032/1‑98 (MQ=255) tCGACCCACGTCTGGCGCGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCACGCTCTCCATTCAGGATCcg < 4:582032/98‑1 (MQ=255) tCTGGCGCTTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCgcgc < 3:252843/71‑1 (MQ=255) tCTGGCGCTTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCgcgc > 4:252843/1‑71 (MQ=255) gcgcGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCAt < 2:803075/115‑1 (MQ=255) gcgcGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCAt > 1:803075/1‑115 (MQ=255) cgcgTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAAcagca < 4:578067/109‑1 (MQ=255) cgcgTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAAcagca > 3:578067/1‑109 (MQ=255) cgcgTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAag < 4:303870/147‑1 (MQ=255) cgcgTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAag > 3:303870/1‑147 (MQ=255) ttgtcgtggaagcgacgatgtttttcgtccgatgcctgctgtttgtccatcggACGTCCGCGCTCTCCATTCAGGATCCGCGCGaa > 3:26320‑M1/54‑86 (MQ=255) ttgtcgtggaagcgacgatgtttttcgtccgatgcctgctgtttgtccatcggACGTCCGCGCTCTCCATTCAGGATCCGCGCGaa < 4:26320‑M1/33‑1 (MQ=255) ggTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAGAGTCTGAc > 2:622854/1‑148 (MQ=255) gTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGct < 1:323113/59‑1 (MQ=255) gTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGct > 2:323113/1‑59 (MQ=255) tGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGAc > 4:259843/1‑110 (MQ=255) tGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGAc < 3:259843/110‑1 (MQ=255) gcAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAGAGTCTGACTTTCTCGCGttt < 1:622854/148‑1 (MQ=255) aaaaCATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCt > 1:271677/1‑113 (MQ=255) aaaaCATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCt < 2:271677/113‑1 (MQ=255) tgcgtgAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAAc > 2:1112828/1‑90 (MQ=255) tgcgtgAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAAc < 1:1112828/90‑1 (MQ=255) tgcgtgAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTcc < 1:67446/102‑1 (MQ=255) tgcgtgAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTcc > 2:67446/1‑102 (MQ=255) cGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCa < 3:537882/68‑1 (MQ=255) cGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCa > 4:537882/1‑68 (MQ=255) atgatTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACg > 3:179443/1‑94 (MQ=255) atgatTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACg < 4:179443/94‑1 (MQ=255) atgatTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAGAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTg > 1:773705/1‑142 (MQ=255) atgatTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAGAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCGTg < 2:773705/142‑1 (MQ=255) gatTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCg < 4:209984/46‑1 (MQ=255) gatTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCg > 3:209984/1‑46 (MQ=255) gatTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGaaaaa > 4:244617/1‑76 (MQ=255) gatTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGaaaaa < 3:244617/76‑1 (MQ=255) atTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACAt < 3:569095/78‑1 (MQ=255) atTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACAt > 4:569095/1‑78 (MQ=255) tATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAGAGTc > 2:902719/1‑99 (MQ=255) tATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAGAGTc < 1:902719/99‑1 (MQ=255) aTCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACAtcgt > 3:797260/1‑78 (MQ=255) aTCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACAtcgt < 4:797260/78‑1 (MQ=255) cACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAAcagca < 4:1129873/54‑1 (MQ=255) cACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAAcagca > 3:1129873/1‑54 (MQ=255) cACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAGAGTCTGAc < 2:786588/100‑1 (MQ=255) cACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAGAGTCTGAc > 1:786588/1‑100 (MQ=255) ACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAGAGTCTGACTTTCTcg > 4:484495‑M1/1‑106 (MQ=255) ACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAGAGTCTGACTTTCTcg < 3:484495‑M1/106‑1 (MQ=255) | GAACAGGCCAGCGCCTATAAACTGACGCCGCTCGGTCGCCAGCTCTCGCAGTTGCCTGTCGACCCACGTCTGGCGCGTATGGTGCTGGAAGCGCAAAAACATGGCTGCGTGCGTGAGGCGATGATTATCACGTCCGCGCTCTCCATTCAGGATCCGCGCGAACGTCCGATGGACAAACAGCAGGCATCGGACGAAAAACATCGTCGCTTCCACGACAAAGAGTCTGACTTTCTCGCGTTTGTGAATCTGTGGAATTATCTTG > NC_000913/1484495‑1484756 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |