| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2456281 = | 39 (0.420) | 7 (0.090) | 8/170 | NT | 18.4% | intergenic (‑635/+46) | yfcV/sixA | putative fimbrial‑like adhesin protein/phosphohistidine phosphatase |
| ? | NC_000913 | 2456318 = | 29 (0.370) | intergenic (‑672/+9) | yfcV/sixA | putative fimbrial‑like adhesin protein/phosphohistidine phosphatase | |||||
CATTATTCATTTCAACATGTAACTTTGGGCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTCCGCTTTCATCAAGCGTTACGCTGGCAA > NC_000913/2456134‑2456415 | gccgagttatgtccgggcgaaacgccgcctatgtttaccacctcggccattgccagcgtaacgcttgatgaaagcggaaacggcacattcaactggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaa > 2:280319‑M1/148‑148 (MQ=255) gagttatgtccgggcgaaacgccgcctatgtttaccacctcggccattgccagcgtaacgcttgatgaaagcggaaacggcacattcaactggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAAtt > 4:441338‑M1/145‑148 (MQ=255) gagttatgtccgggcgaaacgccgcctatgtttaccacctcggccattgccagcgtaacgcttgatgaaagcggaaacggcacattcaactggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAAtt < 3:441338‑M1/4‑1 (MQ=255) gagttatgtccgggcgaaacgccgcctatgtttaccacctcggccattgccagcgtaacgcttgatgaaagcggaaacggcacattcaactggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAAtt < 2:233642‑M1/4‑1 (MQ=255) agttatgtccgggcgaaacgccgcctatgtttaccacctcggccattgccagcgtaacgcttgatgaaagcggaaacggcacattcaactggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTa > 1:830988‑M1/144‑148 (MQ=255) cgggcgaaacgccgcctatgtttaccacctcggccattgccagcgtaacgcttgatgaaagcggaaacggcacattcaactggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTATGCCCAATg < 4:502085‑M1/14‑1 (MQ=255) aCATGTAACTTTGGGCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGa > 1:452833/1‑148 (MQ=255) cATGTAACTTTGGGCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGaa < 2:452833/148‑1 (MQ=255) cgccgcctatgtttaccacctcggccattgccagcgtaacgcttgatgaaagcggaaacggcacattcaactggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTATGCCCAATGa > 2:863852‑M1/126‑140 (MQ=255) cgccgcctatgtttaccacctcggccattgccagcgtaacgcttgatgaaagcggaaacggcacattcaactggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttcaaAATTATGCCCAATGa < 1:863852‑M1/15‑1 (MQ=255) ttGGGCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCa > 1:953823/1‑148 (MQ=255) gggCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCAtt < 2:953823/148‑1 (MQ=255) ttaccacctcggccattgccagcgtaacgcttgatgaaagcggaaacggcacattcaactggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTATGCCCaa > 3:982807‑M1/114‑125 (MQ=255) ttaccacctcggccattgccagcgtaacgcttgatgaaagcggaaacggcacattcaactggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTATGCCCaa < 4:982807‑M1/12‑1 (MQ=255) gATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTa > 1:1033395/1‑129 (MQ=255) gATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTa < 2:1033395/129‑1 (MQ=255) tcggccattgccagcgtaacgcttgatgaaagcggaaacggcacattcaactggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTATGcc < 1:384222‑M1/9‑1 (MQ=255) tcggccattgccagcgtaacgcttgatgaaagcggaaacggcacattcaactggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTATGcc > 2:384222‑M1/106‑114 (MQ=255) attgccagcgtaacgcttgatgaaagcggaaacggcacattcaactggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTATGCCCAATGAATCTACCTCATTggg > 4:76562‑M1/100‑129 (MQ=255) attgccagcgtaacgcttgatgaaagcggaaacggcacattcaactggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTATGCCCAATGAATCTACCTCATTggg < 3:76562‑M1/30‑1 (MQ=255) aTACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTg < 1:725990/122‑1 (MQ=255) aTACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTg > 2:725990/1‑122 (MQ=255) aCTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTa < 3:3620/112‑1 (MQ=255) aCTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTa > 4:3620/1‑112 (MQ=255) cttgatgaaagcggaaacggcacattcaactggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTATGCCCAATGa < 3:554133‑M1/15‑1 (MQ=255) cttgatgaaagcggaaacggcacattcaactggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTATGCCCAATGa > 4:554133‑M1/85‑99 (MQ=255) tgtTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAAttt > 3:194502/1‑107 (MQ=255) tgtTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAAttt < 4:194502/107‑1 (MQ=255) tgtTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACgg > 1:393737/1‑148 (MQ=255) cattcaactggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTAt < 4:682644‑M1/6‑1 (MQ=255) cattcaactggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTAt > 3:682644‑M1/63‑68 (MQ=255) ataGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTc < 3:156797/127‑1 (MQ=255) ataGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTc > 4:156797/1‑127 (MQ=255) gATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCAt > 3:110578/1‑82 (MQ=255) gATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCAt < 4:110578/82‑1 (MQ=255) gATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTgg < 2:721710/85‑1 (MQ=255) gATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTgg > 1:721710/1‑85 (MQ=255) gATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAg > 3:296210/1‑148 (MQ=255) ggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTATGc > 4:342050‑M1/54‑61 (MQ=255) ggcagatgagcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTATGc < 3:342050‑M1/8‑1 (MQ=255) gggAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGa < 2:393737/148‑1 (MQ=255) agcccgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGa < 3:463357‑M1/41‑1 (MQ=255) cccgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTATGCCCAATGa > 3:918746‑M1/44‑58 (MQ=255) cccgtgtaatctgaagatggcaaaagctatctgatgagttccaAATTATGCCCAATGa < 4:918746‑M1/15‑1 (MQ=255) tCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTg < 1:14334/130‑1 (MQ=255) tCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTg > 2:14334/1‑130 (MQ=255) aTAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTcc > 1:15071/1‑148 (MQ=255) tctgaagatggcaaaagctatctgatgagttccaAATTATGc < 2:930035‑M1/8‑1 (MQ=255) tctgaagatggcaaaagctatctgatgagttccaAATTATGc > 1:930035‑M1/35‑42 (MQ=255) agtGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGc < 1:140067/95‑1 (MQ=255) agtGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGc > 2:140067/1‑95 (MQ=255) agtGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTCCGCttt < 2:15071/148‑1 (MQ=255) ctgaagatggcaaaagctatctgatgagttccaAATTATGCCCAATGAATCTACCTCATTg < 1:391096‑M1/28‑1 (MQ=255) ctgaagatggcaaaagctatctgatgagttccaAATTATGCCCAATGAATCTACCTCATTg > 2:391096‑M1/34‑61 (MQ=255) ttGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTc > 1:1038764/1‑95 (MQ=255) ttGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTc < 2:1038764/95‑1 (MQ=255) ttGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTCCGCTTTCATCAAg < 4:296210/148‑1 (MQ=255) atggcaaaagctatctgatgagttccaAATTATGCCCAATGAATCTACCTCAt < 3:666676‑M1/26‑1 (MQ=255) atggcaaaagctatctgatgagttccaAATTATGCCCAATGAATCTACCTCAt > 4:666676‑M1/28‑53 (MQ=255) aCAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCAt > 3:796564/1‑88 (MQ=255) aCAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCAt < 4:796564/88‑1 (MQ=255) tCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAAtgt > 2:821746/1‑117 (MQ=255) tCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAAtgt < 1:821746/117‑1 (MQ=255) ccGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTac < 3:814098/91‑1 (MQ=255) ccGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTac > 4:814098/1‑91 (MQ=255) cGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTac > 4:1058335/1‑90 (MQ=255) cGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTac < 3:1058335/90‑1 (MQ=255) cTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTCCGCTTTCATCAAGCGTTACGCTGGCaa > 3:502085/1‑148 (MQ=255) tccaAATTATGCCCAATGAGGTAGATTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCt < 4:463357‑M1/82‑1 (MQ=255) cAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTcc < 2:590141/110‑1 (MQ=255) cAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTcc > 1:590141/1‑110 (MQ=255) | CATTATTCATTTCAACATGTAACTTTGGGCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTCCGCTTTCATCAAGCGTTACGCTGGCAA > NC_000913/2456134‑2456415 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |