New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2811829 =	74 (0.790)	4 (0.040)	4/192	NT	5.2%	coding (403/1173 nt)	emrA	multidrug efflux system
	?	NC_000913	2811877 =	74 (0.830)					coding (451/1173 nt)	emrA	multidrug efflux system

GACGTGCTGGTCACTCTCGACCCGACAGATGCTCGCCAGGCGTTTGAAAAAGCCAAAACTGCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGTGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCA  >  NC_000913/2811685‑2811976                                                                                                                                                 |                                                                                                                                                    ggctggctgatcttccagtttagtccccagaatcatcgcctgattggcattgtattgttgaatcgcgacgtccagttgcgcctgggcactggtgacggcgtcgcgggcgtgttgcagctcttcgcgaccaatcaggttggcattGccc                                                                                                                                                  >  4:556685‑M1/145‑148 (MQ=255)        tGGTCACTCTCGACCCGACAGATGCTCGCCAGGCGTTTGAAAAAGCCAAAACTGCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGaa                                                                                                                                           >  2:889947/1‑148 (MQ=255)              ctctCGACCCGACAGATGCTCGCCAGGCGTTTGAAAAAGCCAAAACTGCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGcaca                                                                                                                                     <  1:889947/148‑1 (MQ=255)                   gACCCGACAGATGCTCGCCAGGCGTTTGAAAAAGCCAAAACTGCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCg                                                                                                                                <  3:782892/148‑1 (MQ=255)                          cAGATGCTCGCCAGGCGTTTGAAAAAGCCAAAACTGCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATGTTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACaa                                                                                                                         >  4:756911/1‑148 (MQ=255)                                  cGCCAGGCGTTTGAAAAAGCCAAAACTGCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGca                                                                                                                                       <  3:431208/126‑1 (MQ=255)                                  cGCCAGGCGTTTGAAAAAGCCAAAACTGCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGca                                                                                                                                       >  4:431208/1‑126 (MQ=255)                                    ccAGGCGTTTGAAAAAGCCAAAACTGCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGa                                                                                                                               <  3:515625/132‑1 (MQ=255)                                    ccAGGCGTTTGAAAAAGCCAAAACTGCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGa                                                                                                                               >  4:515625/1‑132 (MQ=255)                                            ttGAAAAAGCCAAAACTGCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGa                                                                                                                               <  1:1010088/124‑1 (MQ=255)                                            ttGAAAAAGCCAAAACTGCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGa                                                                                                                               >  2:1010088/1‑124 (MQ=255)                                             tggcattgtattgttgaatcgcgacgtccagttgcgcctgggcactggtgacggcgtcgcgggcgtgttgcagctcttcgcgaccaatcaggttggcattGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGc                                                                                                      <  1:1084183‑M1/48‑1 (MQ=255)                                             tGAAAAAGCCAAAACTGCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCg                                                                                                                                >  1:675593/1‑122 (MQ=255)                                             tGAAAAAGCCAAAACTGCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCg                                                                                                                                <  2:675593/122‑1 (MQ=255)                                             tGAAAAAGCCAAAACTGCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGc                                                                                                      >  2:568441/1‑148 (MQ=255)                                                cattgtattgttgaatcgcgacgtccagttgcgcctgggcactggtgacggcgtcgcgggcgtgttgcagctcttcgcgaccaatcaggttggcattGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAAt                                                                                                   >  2:1084183‑M1/98‑148 (MQ=255)                                                aaaaGCCAAAACTGCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAAt                                                                                                   <  1:568441/148‑1 (MQ=255)                                                     ccAAAACTGCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCg                                                                                                                                <  2:705862/114‑1 (MQ=255)                                                     ccAAAACTGCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCg                                                                                                                                >  1:705862/1‑114 (MQ=255)                                                     ccAAAACTGCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCaa                                                                                                    >  2:548455/1‑142 (MQ=255)                                                     ccAAAACTGCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCaa                                                                                                    <  1:548455/142‑1 (MQ=255)                                                          aCTGCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGa                                                                                         >  4:1113291/1‑148 (MQ=255)                                                             gCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCa                                                                                               <  3:570699/139‑1 (MQ=255)                                                             gCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCa                                                                                               >  4:570699/1‑139 (MQ=255)                                                                    cTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTg                                                                                          <  4:522153/137‑1 (MQ=255)                                                                    cTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTg                                                                                          >  3:522153/1‑137 (MQ=255)                                                                      tCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACCAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAag                                                                             >  4:628414/1‑148 (MQ=255)                                                                         aGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGc                                                                                                                                        <  1:338209/86‑1 (MQ=255)                                                                         aGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGc                                                                                                                                        >  2:338209/1‑86 (MQ=255)                                                                           cGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATGTTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTg                                                                        <  3:756911/148‑1 (MQ=255)                                                                           cGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTg                                                                        >  3:687155/1‑148 (MQ=255)                                                                           cGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTg                                                                        >  2:345386/1‑148 (MQ=255)                                                                             ttCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGAt                                                                                        <  4:976562/130‑1 (MQ=255)                                                                             ttCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGAt                                                                                        >  3:976562/1‑130 (MQ=255)                                                                              tCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTg                                                                                                         >  3:413616/1‑112 (MQ=255)                                                                              tCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTg                                                                                                         <  4:413616/112‑1 (MQ=255)                                                                              tCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCaa                                                                     <  3:1113291/148‑1 (MQ=255)                                                                                 ccAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAAt                                                                                                   <  4:185801/115‑1 (MQ=255)                                                                                 ccAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAAt                                                                                                   >  3:185801/1‑115 (MQ=255)                                                                                  cAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCg                                                                                                                                <  1:477636/85‑1 (MQ=255)                                                                                  cAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCg                                                                                                                                >  2:477636/1‑85 (MQ=255)                                                                                  cAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCg                                                                                                                                >  4:1080965/1‑85 (MQ=255)                                                                                  cAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCg                                                                                                                                <  3:1080965/85‑1 (MQ=255)                                                                                    aaCCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCg                                                                                                                                >  4:865078/1‑83 (MQ=255)                                                                                    aaCCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCg                                                                                                                                <  3:865078/83‑1 (MQ=255)                                                                                        caccaGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGa                                                                               >  1:515457/1‑128 (MQ=255)                                                                                        caccaGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGa                                                                               <  2:515457/128‑1 (MQ=255)                                                                                        actggtgacggcgtcgcgggcgtgttgcagctcttcgcgaccaatcaggttggcattGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCaa                                                                                                    <  4:35432‑M1/50‑1 (MQ=255)                                                                                        actggtgacggcgtcgcgggcgtgttgcagctcttcgcgaccaatcaggttggcattGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCaa                                                                                                    >  3:35432‑M1/58‑107 (MQ=255)                                                                                           caGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGc                                                                          <  2:1120927/130‑1 (MQ=255)                                                                                           caGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGc                                                                          >  1:1120927/1‑130 (MQ=255)                                                                                                  tgatTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGt                                                                                    >  2:170988/1‑113 (MQ=255)                                                                                                  tgatTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGt                                                                                    <  1:170988/113‑1 (MQ=255)                                                                                                    atTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACa                                                                                                                          <  4:32735/73‑1 (MQ=255)                                                                                                    atTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACa                                                                                                                          >  3:32735/1‑73 (MQ=255)                                                                                                      tAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGt                                             <  3:628414/148‑1 (MQ=255)                                                                                                              agcaGTTGCAGGCGAATGTTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGa                                                                               >  2:497708/1‑106 (MQ=255)                                                                                                              agcaGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGa                                                                               <  1:497708/106‑1 (MQ=255)                                                                                                              agcaGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGTGCCCa                                        <  3:455765/145‑1 (MQ=255)                                                                                                              agcaGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGTGCCCa                                        >  4:455765/1‑145 (MQ=255)                                                                                                                caGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGa                                                          >  4:113114/1‑125 (MQ=255)                                                                                                                caGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGa                                                          <  3:113114/125‑1 (MQ=255)                                                                                                                        ggCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACaaa                                                                                                                                   <  3:305373/44‑1 (MQ=255)                                                                                                                        ggCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACaaa                                                                                                                                   >  4:305373/1‑44 (MQ=255)                                                                                                                        ggCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTgg                                                                                     >  3:351674/1‑90 (MQ=255)                                                                                                                        ggCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTgg                                                                                     <  4:351674/90‑1 (MQ=255)                                                                                                                         gCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGAt                                                                                        >  2:376995/1‑86 (MQ=255)                                                                                                                         gCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGAt                                                                                        <  1:376995/86‑1 (MQ=255)                                                                                                                         gCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGTCGCCGTCACCAGTGTACAAGCACAACTGGACg                          >  4:204011/1‑148 (MQ=255)                                                                                                                              tatTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGTGCCCAGGCGCAACTGGACGTcgcg                     <  4:687155/148‑1 (MQ=255)                                                                                                                                       gCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTTCAACACGCCCGCGACGCCGTCACCAGTGCCCAGGCGCAACTGGACGTcgcg                     <  1:178612/139‑1 (MQ=255)                                                                                                                                       gCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTTCAACACGCCCGCGACGCCGTCACCAGTGCCCAGGCGCAACTGGACGTcgcg                     >  2:178612/1‑139 (MQ=255)                                                                                                                                          gAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGc                                                                                                              >  4:145928/1‑47 (MQ=255)                                                                                                                                          gAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGc                                                                                                              <  3:145928/47‑1 (MQ=255)                                                                                                                                          gAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCt                                                                                                          <  2:787388/51‑1 (MQ=255)                                                                                                                                          gAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCt                                                                                                          >  1:787388/1‑51 (MQ=255)                                                                                                                                           aaaaTCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGt                                                                                    >  4:30411/1‑72 (MQ=255)                                                                                                                                           aaaaTCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGt                                                                                    <  3:30411/72‑1 (MQ=255)                                                                                                                                           aaaaTCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGTGCCCAGGCGCAACTGGACGTCGCGATTCAacaataca        >  1:32146/1‑148 (MQ=255)                                                                                                                                              aTCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGTGCCCAGGCGCAACTGGACGTCGCGAtt                  >  4:735401/1‑135 (MQ=255)                                                                                                                                              aTCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGTGCCCAGGCGCAACTGGACGTCGCGAtt                  <  3:735401/135‑1 (MQ=255)                                                                                                                                               tCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGc                                                                <  1:739581/88‑1 (MQ=255)                                                                                                                                               tCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGc                                                                >  2:739581/1‑88 (MQ=255)                                                                                                                                                 GCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGTGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCa  >  1:345386‑M1/1‑148 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GACGTGCTGGTCACTCTCGACCCGACAGATGCTCGCCAGGCGTTTGAAAAAGCCAAAACTGCACTGGCTTCCAGCGTTCGCCAAACCCACCAGCTGATGATTAACAGCAAGCAGTTGCAGGCGAATATTGAGGTGCAGAAAATCGCCCTCGCGAAAGCACAAAGCGACTACAACCGCCGTGTGCCGCTGGGCAATGCCAACCTGATTGGTCGCGAAGAGCTGCAACACGCCCGCGACGCCGTCACCAGTGCCCAGGCGCAACTGGACGTCGCGATTCAACAATACAATGCCA  >  NC_000913/2811685‑2811976

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.