| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3250977 = | 40 (0.430) | 5 (0.060) | 5/176 | NT | 15.1% | intergenic (+23/‑47) | yqjF/yqjG | putative quinol oxidase subunit/putative S‑transferase |
| ? | NC_000913 | 3251005 = | 21 (0.260) | intergenic (+51/‑19) | yqjF/yqjG | putative quinol oxidase subunit/putative S‑transferase | |||||
TGCTGAAGGCGTCAACTCGCTGATGTTCATGAAAAACCTGACAATTTCTGGCGGATTCCTGCTGCTGGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATACCAAATCTACCGGCGGTAAATTTCAACGTTCAGCTTCCGCATTTCGTAAC > NC_000913/3250831‑3251119 | tggggccaggagcgccatcggcagtgagccagttacgaaatgcggaagctgaacgttgaaatttaccgccggtagatttggtatcgtaccaggtgtcatgccagacgccgtcaatcagttgacccatttttctctcctccaatagcaa < 2:1002112‑M1/2‑1 (MQ=255) gAAGGCGTCAACTCGCTGATGTTCATGAAAAACCTGACAATTTCTGGCGGATTCCTGCTGCTGGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAAc > 2:514703/1‑148 (MQ=255) gAAGGCGTCAACTCGCTGATGTTCATGAAAAACCTGACAATTTCTGGCGGATTCCTGCTGCTGGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAAc > 1:613636/1‑148 (MQ=255) aGGCGTCAACTCGCTGATGTTCATGAAAAACCTGACAATTTCTGGCGGATTCCTGCTGCTGGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACga < 1:514703/148‑1 (MQ=255) gccatcggcagtgagccagttacgaaatgcggaagctgaacgttgaaatttaccgccggtagatttggtatcgtaccaggtgtcatgccagacgccgtcaatcagttgacccatttttctctcctccaatagcAAAAACga > 2:74251‑M1/134‑141 (MQ=255) gccatcggcagtgagccagttacgaaatgcggaagctgaacgttgaaatttaccgccggtagatttggtatcgtaccaggtgtcatgccagacgccgtcaatcagttgacccatttttctctcctccaatagcAAAAACga < 1:74251‑M1/8‑1 (MQ=255) tGTTCATGAAAAACCTGACAATTTCTGGCGGATTCCTGCTGCTGGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGtt < 1:455372/148‑1 (MQ=255) aaaaaCCTGACAATTTCTGGCGGATTCCTGCTGCTGGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGCTTCCTCCTCGtt < 1:160012/140‑1 (MQ=255) cgaaatgcggaagctgaacgttgaaatttaccgccggtagatttggtatcgtaccaggtgtcatgccagacgccgtcaatcagttgacccatttttctctcctccaatagcAAAAACg < 3:1116493‑M1/7‑1 (MQ=255) cgaaatgcggaagctgaacgttgaaatttaccgccggtagatttggtatcgtaccaggtgtcatgccagacgccgtcaatcagttgacccatttttctctcctccaatagcAAAAACg > 4:1116493‑M1/112‑118 (MQ=255) ccTGACAATTTCTGGCGGATTCCTGCTGCTGGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACg > 2:963992/1‑117 (MQ=255) ccTGACAATTTCTGGCGGATTCCTGCTGCTGGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACg < 1:963992/117‑1 (MQ=255) cAATTTCTGGCGGATTCCTGCTGCTGGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGgaggag < 3:337055/146‑1 (MQ=255) cAATTTCTGGCGGATTCCTGCTGCTGGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGgaggag > 4:337055/1‑146 (MQ=255) aTTTCTGGCGGATTCCTGCTGCTGGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGCTTCCTCCTCGtt > 3:799671/1‑128 (MQ=255) aTTTCTGGCGGATTCCTGCTGCTGGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGCTTCCTCCTCGtt < 4:799671/128‑1 (MQ=255) gctgaacgttgaaatttaccgccggtagatttggtatcgtaccaggtgtcatgccagacgccgtcaatcagttgacccatttttctctcctccaatagcAAAAACga > 4:685594‑M1/100‑107 (MQ=255) gctgaacgttgaaatttaccgccggtagatttggtatcgtaccaggtgtcatgccagacgccgtcaatcagttgacccatttttctctcctccaatagcAAAAACga < 3:685594‑M1/8‑1 (MQ=255) ccTGCTGCTGGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTg < 2:264323/148‑1 (MQ=255) tttaccgccggtagatttggtatcgtaccaggtgtcatgccagacgccgtcaatcagttgacccatttttctctcctccaatagcAAAAACg > 2:1125634‑M1/86‑92 (MQ=255) tttaccgccggtagatttggtatcgtaccaggtgtcatgccagacgccgtcaatcagttgacccatttttctctcctccaatagcAAAAACg < 1:1125634‑M1/7‑1 (MQ=255) tgGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAAt < 1:316211/130‑1 (MQ=255) tgGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAAt > 2:316211/1‑130 (MQ=255) aTTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACgaggagctt < 1:75902/91‑4 (MQ=255) aTTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACgaggagctt > 2:75902/1‑88 (MQ=255) cGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACgagg > 2:1101373/1‑81 (MQ=255) cGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACgagg < 1:1101373/81‑1 (MQ=255) ccGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGa > 2:101296/1‑131 (MQ=255) ccGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGa < 1:101296/131‑1 (MQ=255) gcgcGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGa > 4:466985/1‑123 (MQ=255) gcgcGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGa < 3:466985/123‑1 (MQ=255) aGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACg < 1:282995/62‑1 (MQ=255) aGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACg > 2:282995/1‑62 (MQ=255) aTCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGa < 1:835367/112‑1 (MQ=255) aTCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGa > 2:835367/1‑112 (MQ=255) gctgAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATggg < 3:879779/93‑1 (MQ=255) gctgAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATggg > 4:879779/1‑93 (MQ=255) gAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTAt < 4:738040/71‑1 (MQ=255) gAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTAt > 3:738040/1‑71 (MQ=255) gAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATAc < 2:1053152/132‑1 (MQ=255) gAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATAc > 1:1053152/1‑132 (MQ=255) gtcaaccagttgacccatttttctctcctccaatagcAAAAACGAGGAGGAAGCACCTCGtt < 2:463285‑M1/25‑1 (MQ=255) atcagttgacccatttttctctcctccaatagcAAAAACGAGGAGGAAGCTCCTCg < 4:159468‑M1/23‑1 (MQ=255) atcagttgacccatttttctctcctccaatagcAAAAACGAGGAGGAAGCTCCTCg > 3:159468‑M1/34‑56 (MQ=255) aaaGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGctcct > 2:830219/1‑53 (MQ=255) aaaGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGctcct < 1:830219/53‑1 (MQ=255) ttgacccatttttctctcctccaatagcAAAAACGAGGAGGAAGCTCCTCg < 3:680174‑M1/23‑1 (MQ=255) ttgacccatttttctctcctccaatagcAAAAACGAGGAGGAAGCTCCTCg > 4:680174‑M1/29‑51 (MQ=255) aaGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATACCAAATCTAcc > 1:629032/1‑128 (MQ=255) aaGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATACCAAATCTAcc < 2:629032/128‑1 (MQ=255) aGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTgga < 2:439589/60‑1 (MQ=255) aGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTgga > 1:439589/1‑60 (MQ=255) aCGCGCTATACTTAACGATAAAAAACGAGGAGCATCCTCCTCg > 2:178218/1‑43 (MQ=255) tAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATACCAAATCTACCGGCGGTAAATTTCAACGTTCAGCTTCCGCATTTCGt > 2:288598/1‑148 (MQ=255) cGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATACCAAATCTACCGGCGGTAAATTTCAACGTTCAGCTTCCGCATTTCGTAAc < 1:288598/148‑1 (MQ=255) | TGCTGAAGGCGTCAACTCGCTGATGTTCATGAAAAACCTGACAATTTCTGGCGGATTCCTGCTGCTGGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATACCAAATCTACCGGCGGTAAATTTCAACGTTCAGCTTCCGCATTTCGTAAC > NC_000913/3250831‑3251119 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |