BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3344992 =	64 (0.690)	13 (0.150)	9/180	NT	18.6%	coding (276/1434 nt)	rpoN	RNA polymerase, sigma 54 (sigma N) factor
*	?	NC_000913	3345024 =	56 (0.670)	13 (0.150)	9/180	NT	18.6%	coding (308/1434 nt)	rpoN	RNA polymerase, sigma 54 (sigma N) factor

Only 100 of 101 total aligned reads displayed.

GCTTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACACTGACCGCGC  >  NC_000913/3344854‑3345132

caacggcatcgacgatagaggtagcaatagcgcggtcagtgtcggaaaacggtgtcagctcaacctgccacatcaggtaatcctgcaaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCGCTGGt                                                                                                                                     <  4:773647‑M1/10‑1 (MQ=255)

caacggcatcgacgatagaggtagcaatagcgcggtcagtgtcggaaaacggtgtcagctcaacctgccacatcaggtaatcctgcaaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCGCTGGt                                                                                                                                     <  2:548490‑M1/10‑1 (MQ=255)

 aacggcatcgatgatagaggtagcaatagcgcggtcagtgtcggaaaacggtgtcagctcaacctgccacatcaggtaatcctgcaaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCGCt                                                                                                                                        >  3:545837‑M1/138‑144 (MQ=255)

 aacggcatcgatgatagaggtagcaatagcgcggtcagtgtcggaaaacggtgtcagctcaacctgccacatcaggtaatcctgcaaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCGCt                                                                                                                                        <  4:545837‑M1/7‑1 (MQ=255)

 aacggcatcgacgatagaggtagcaatagcgcggtcagtgtcggaaaacggtgtcagctcaacctgccacatcaggtaatcctgcaaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCGCt                                                                                                                                        >  1:712943‑M1/138‑144 (MQ=255)

 aacggcatcgacgatagaggtagcaatagcgcggtcagtgtcggaaaacggtgtcagctcaacctgccacatcaggtaatcctgcaaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCGCt                                                                                                                                        <  2:712943‑M1/7‑1 (MQ=255)

       cAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTaca                                                                                                                                             >  4:395588/1‑133 (MQ=255)

       cAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTaca                                                                                                                                             <  3:395588/133‑1 (MQ=255)

       cAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCAt                                                                                                                              <  1:576982/148‑1 (MQ=255)

         cgacgatagaggtagcaatagcgcggtcagtgtcggaaaacggtgtcagctcaacctgccacatcaggtaatcctgcaaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCGCTGGTACACCATcc                                                                                                                            <  4:564962‑M1/19‑1 (MQ=255)

               tagaggtagcaatagcgcggtcagtgtcggaaaacggtgtcagctcaacctgccacatcaggtaatcctgcaaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCg                                                                                                                                          >  2:1039272‑M1/124‑128 (MQ=255)

               tagaggtagcaatagcgcggtcagtgtcggaaaacggtgtcagctcaacctgccacatcaggtaatcctgcaaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCg                                                                                                                                          <  1:1039272‑M1/5‑1 (MQ=255)

                  aggtagcaatagcgcggtcagtgtcggaaaacggtgtcagctcaacctgccacatcaggtaatcctgcaaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCGCTGGTACACCATCCGGCACCAGc                                                                                                                   >  3:564962‑M1/121‑148 (MQ=255)

                   ggtagcaatagcgcggtcagtgtcggaaaacggtgtcagctcaacctgccacatcaggtaatcctgcaaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCGCTGGTACACCATCCGGCACCAGCg                                                                                                                  >  1:756219‑M1/120‑148 (MQ=255)

                      gaagaaATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTg                                                                                                               >  2:35820/1‑148 (MQ=255)

                             tCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTg                                                                                                               >  1:432630/1‑141 (MQ=255)

                             tCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTg                                                                                                               <  2:432630/141‑1 (MQ=255)

                               gACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCgg                                                                                                                 <  1:9165/137‑1 (MQ=255)

                               gACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCgg                                                                                                                 >  2:9165/1‑137 (MQ=255)

                                acacCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTg                                                                                                               <  1:463177/138‑1 (MQ=255)

                                acacCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTg                                                                                                               >  2:463177/1‑138 (MQ=255)

                                   cccGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTaca                                                                                                                                  <  3:223275/116‑1 (MQ=255)

                                   cccGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTaca                                                                                                                                  >  4:223275/1‑116 (MQ=255)

                                   cccGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCAcc                                                                                                                      >  1:343888/1‑128 (MQ=255)

                                   cccGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCAcc                                                                                                                      <  2:343888/128‑1 (MQ=255)

                                     cgcgAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCAt                                                                                                                              <  2:441788/118‑1 (MQ=255)

                                     cgcgAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCAt                                                                                                                              <  3:211513/118‑1 (MQ=255)

                                     cgcgAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCAt                                                                                                                              >  4:211513/1‑118 (MQ=255)

                                     cgcgAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCAt                                                                                                                              >  1:441788/1‑118 (MQ=255)

                                     cgcgAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGacgacg                                                                                                <  1:35820/148‑1 (MQ=255)

                                        gtcggaaaacggtgtcagctcaacctgccacatcaggtaatcctgcaaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCGCTGGTACACCATCCGGCACCAGCgg                                                                                                                 <  4:683773‑M1/30‑1 (MQ=255)

                                        gtcggaaaacggtgtcagctcaacctgccacatcaggtaatcctgcaaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCGCTGGTACACCATCCGGCACCAGCgg                                                                                                                 >  3:683773‑M1/99‑128 (MQ=255)

                                         aaaCGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTgg                                                                                                                                      >  3:971306/1‑106 (MQ=255)

                                          cggaaaacggtgtcagctcaacctgccacatcaggtaatcctgcaaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCGCTGGTACACCATCCGGCACCAGCgg                                                                                                                 <  1:666290‑M1/30‑1 (MQ=255)

                                          cggaaaacggtgtcagctcaacctgccacatcaggtaatcctgcaaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCGCTGGTACACCATCCGGCACCAGCgg                                                                                                                 >  2:666290‑M1/97‑126 (MQ=255)

                                          aaCGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACAt                                                                                                        <  3:395809/135‑1 (MQ=255)

                                          aaCGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACAt                                                                                                        >  4:395809/1‑135 (MQ=255)

                                                      tcagctcaacctgccacatcaggtaatcctgcaaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCGCTGGTACACCATCCGGCACCAGCgg                                                                                                                 <  4:264328‑M1/30‑1 (MQ=255)

                                                      tcagctcaacctgccacatcaggtaatcctgcaaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCGCTGGTACACCATCCGGCACCAGCgg                                                                                                                 >  3:264328‑M1/85‑114 (MQ=255)

                                                       gAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCg                                                                                                                  <  1:467504/112‑1 (MQ=255)

                                                       gAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCg                                                                                                                  >  2:467504/1‑112 (MQ=255)

                                                                gACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAacga                                                                     >  2:847848/1‑148 (MQ=255)

                                                                      gccgACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGc                                                                                                                                         <  3:8833/74‑1 (MQ=255)

                                                                      gccgACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGc                                                                                                                                         >  4:8833/1‑74 (MQ=255)

                                                                        cgACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGc                                                                                                                   >  4:690535/1‑94 (MQ=255)

                                                                        cgACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGc                                                                                                                   <  3:690535/94‑1 (MQ=255)

                                                                               atcctgcaaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCGCTgg                                                                                                                                      <  3:442575‑M1/9‑1 (MQ=255)

                                                                               atcctgcaaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCGCTgg                                                                                                                                      >  4:442575‑M1/60‑68 (MQ=255)

                                                                                 cGAACAAAAAGAGTTGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGaa                                                                         >  3:81250/1‑127 (MQ=255)

                                                                                 cGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGaa                                                                         <  4:81250/127‑1 (MQ=255)

                                                                                   aaCAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTGCACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTga                                                                                                     >  1:739563/1‑97 (MQ=255)

                                                                                   aaCAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCgg                                                                                                                 >  4:833895/1‑85 (MQ=255)

                                                                                   aaCAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCgg                                                                                                                 <  3:833895/85‑1 (MQ=255)

                                                                                   aaCAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTga                                                                                                     <  2:739563/97‑1 (MQ=255)

                                                                                     caaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCGCTGGTACACCATCCGGCACCAGCgg                                                                                                                 <  4:62059‑M1/30‑1 (MQ=255)

                                                                                     caaggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCGCTGGTACACCATCCGGCACCAGCgg                                                                                                                 >  3:62059‑M1/54‑83 (MQ=255)

                                                                                     cAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTa                                                                                   <  1:134407/113‑1 (MQ=255)

                                                                                     cAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTa                                                                                   >  2:134407/1‑113 (MQ=255)

                                                                                      aaaaaGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGacgacg                                                                                                <  3:1142185/99‑1 (MQ=255)

                                                                                      aaaaaGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGacgacg                                                                                                >  4:1142185/1‑99 (MQ=255)

                                                                                       aggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCGCTGGTACACCATCCGGCACCAGc                                                                                                                   >  3:186139‑M1/52‑79 (MQ=255)

                                                                                       aggtctgcgtcgtttcgccctggtagaccggcagctcgtcgtcaatgtagtCACCGCTGGTACACCATCCGGCACCAGc                                                                                                                   <  4:186139‑M1/28‑1 (MQ=255)

                                                                                       aaaaGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGc                                                                                                                                         >  1:1019450/1‑57 (MQ=255)

                                                                                       aaaaGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGc                                                                                                                                         <  2:1019450/57‑1 (MQ=255)

                                                                                       aaaaGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAg                                                                               <  1:496426/115‑1 (MQ=255)

                                                                                       aaaaGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAg                                                                               >  2:496426/1‑115 (MQ=255)

                                                                                        aaaGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGa                                             <  1:847848/148‑1 (MQ=255)

                                                                                         aaGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGcc                                                                                         >  2:769991/1‑103 (MQ=255)

                                                                                         aaGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGcc                                                                                         <  1:769991/103‑1 (MQ=255)

                                                                                          agagATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCgg                                                                                                                 >  2:717390/1‑78 (MQ=255)

                                                                                          agagATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCgg                                                                                                                 <  1:717390/78‑1 (MQ=255)

                                                                                                             ccGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGc                                                                                                                   >  3:728132/1‑57 (MQ=255)

                                                                                                             ccGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGc                                                                                                                   <  4:728132/57‑1 (MQ=255)

                                                                                                                cTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCtt                                                           <  2:701764/110‑1 (MQ=255)

                                                                                                                cTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCtt                                                           >  1:701764/1‑110 (MQ=255)

                                                                                                                cTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAg                                     <  4:274630/132‑1 (MQ=255)

                                                                                                                cTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAg                                     >  3:274630/1‑132 (MQ=255)

                                                                                                                  cGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTg                                              <  2:504950/121‑1 (MQ=255)

                                                                                                                  cGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTg                                              >  1:504950/1‑121 (MQ=255)

                                                                                                                    aTGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAggg                                                                             <  4:931235/88‑1 (MQ=255)

                                                                                                                    aTGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAggg                                                                             >  3:931235/1‑88 (MQ=255)

                                                                                                                      gCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTc                 >  3:548068/1‑146 (MQ=255)

                                                                                                                      gCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTc                 <  4:548068/146‑1 (MQ=255)

                                                                                                                          gTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGc                              <  4:205491/129‑1 (MQ=255)

                                                                                                                          gTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGc                              >  3:205491/1‑129 (MQ=255)

                                                                                                                                 cacCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGa                                <  4:1002295/120‑1 (MQ=255)

                                                                                                                                 cacCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGa                                >  3:1002295/1‑120 (MQ=255)

                                                                                                                                   ccATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACACTGACCgcgc  >  1:32269/1‑148 (MQ=255)

                                                                                                                                     aTTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAgg                                                      <  1:116262/94‑1 (MQ=255)

                                                                                                                                     aTTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAgg                                                      >  2:116262/1‑94 (MQ=255)

                                                                                                                                      tttACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAggtc                                                                            >  2:83686/1‑69 (MQ=255)

                                                                                                                                      tttACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAggtc                                                                            <  1:83686/71‑3 (MQ=255)

                                                                                                                                      tttACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtgtg                                         >  2:506353/1‑106 (MQ=255)

                                                                                                                                      tttACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGAtgtg                                         <  1:506353/106‑1 (MQ=255)

                                                                                                                                       ttACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTg                                 <  4:49273/113‑1 (MQ=255)

                                                                                                                                       ttACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTg                                 >  3:49273/1‑113 (MQ=255)

                                                                                                                                       ttACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAg                               >  3:1010900/1‑115 (MQ=255)

                                                                                                                                       ttACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAg                               <  4:1010900/115‑1 (MQ=255)

                                                                                                                                       ttACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACACTGAc       <  2:70458/139‑1 (MQ=255)

                                                                                                                                       ttACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACACTGAc       >  1:70458/1‑139 (MQ=255)

GCTTGAGCAAATCGACACTCATGAAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAAGAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGACGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTGAGCTGACACCGTTTTCCGACACTGACCGCGC  >  NC_000913/3344854‑3345132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.