| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4094379 = | 5 (0.050) | 4 (0.050) | 4/170 | NT | 39.5% | noncoding (64/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 4094422 = | 8 (0.100) | noncoding (107/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
CTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGA > NC_000913/4094240‑4094496 | cTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTAt > 4:177956/1‑144 (MQ=255)cTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTAt < 3:177956/144‑1 (MQ=255) gCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTg < 1:894988/148‑1 (MQ=255) cggatgcggcacaagtgccttatccggcctacaggtcggcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgattgccggatgcggcacaagtgcCTTa < 4:650605‑M1/4‑1 (MQ=255) cggatgcggcacaagtgccttatccggcctacaggtcggcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgattgccggatgcggcacaagtgcCTTa > 3:650605‑M1/111‑114 (MQ=255) gTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGc > 3:241034/1‑116 (MQ=255) gTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGc < 4:241034/116‑1 (MQ=255) tAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCtt > 3:1069113/1‑95 (MQ=255) tAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCtt < 4:1069113/95‑1 (MQ=255) cttatccggcctacaggtcggcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgattgccggatgcggcacaagtgcCTTATc > 3:1106943‑M1/93‑98 (MQ=255) cttatccggcctacaggtcggcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgattgccggatgcggcacaagtgcCTTATc < 4:1106943‑M1/6‑1 (MQ=255) acaggtcggcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgattgccggatgcggcacaagtgcCTTATCAGGCCTa > 3:604841‑M1/81‑93 (MQ=255) acaggtcggcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgattgccggatgcggcacaagtgcCTTATCAGGCCTa < 4:604841‑M1/13‑1 (MQ=255) tgataagacgcgacagcgtcgcatcaggcattgattgccggatgcggcacaagtgcCTTATCAGGCCTACAACTATTGCCGACCTGTAgg > 3:566856‑M1/57‑90 (MQ=255) tgataagacgcgacagcgtcgcatcaggcattgattgccggatgcggcacaagtgcCTTATCAGGCCTACAACTATTGCCGACCTGTAgg < 4:566856‑M1/34‑1 (MQ=255) aGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGca > 2:641277/1‑115 (MQ=255) aGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGca < 1:641277/115‑1 (MQ=255) tcaggcattgattgccggatgcggcacaagtgcCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATaa < 1:640794‑M1/42‑1 (MQ=255) tcaggcattgattgccggatgcggcacaagtgcCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATaa > 2:640794‑M1/34‑75 (MQ=255) cgcgTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGcc < 2:989174/78‑1 (MQ=34) cgcgTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGcc > 1:989174/1‑78 (MQ=34) tCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGa > 3:214534/1‑119 (MQ=32) tCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGa < 4:214534/119‑1 (MQ=33) | CTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGA > NC_000913/4094240‑4094496 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |