New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4142066 =	67 (0.720)	8 (0.090)	8/182	NT	11.1%	coding (156/2502 nt)	frwA	putative PTS enzyme: Hpr, enzyme I and II components
	?	NC_000913	4142096 =	67 (0.790)					coding (126/2502 nt)	frwA	putative PTS enzyme: Hpr, enzyme I and II components

CAGATTTAACTTCCGCCAGCGGCGCATCGCAGTGGGGGAATTCATCGCGCAGCCATTGGCTTAAACGCTGGTGCGCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACGCCGTTAGGTAGCTCACAAATAAATTCCACA  >  NC_000913/4141921‑4142210                                                                                                                                                  |                                                                                                                                                 cAGATTTAACTTCCGCCAGCGGCGCATCGCAGTGGGGGAATTCATCGCGCAGCCATTGGCTTAAACGCTGGTGCGCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAgcgc                                                                                                                                                >  1:895860/1‑148 (MQ=255)    taccgggagagaggcaatggccctgattgtggaatttatttgtgagctacctaacggcgtacatgcgcgtccggcaagccacgttgaaacgctgtgtaatactttttcatcacaaattgagtggcataacctgcgcactgacCGCAAg                                                                                                                                             >  2:6078‑M1/143‑148 (MQ=255)    aTTTAACTTCCGCCAGCGGCGCATCGCAGTGGGGGAATTCATCGCGCAGCCATTGGCTTAAACGCTGGTGCGCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAg                                                                                                                                             <  2:895860/148‑1 (MQ=255)     accgggagagaggcaatggccctgattgtggaatttatttgtgagctacctaacggcgtacatgcgcgtccggcaagccacgttgaaacgctgtgtaatactttttcatcacaaattgagtggcataacctgcgcactgacCGCAAgg                                                                                                                                            <  4:1089131‑M1/7‑1 (MQ=255)       tAACTTCCGCCAGCGGCGCATCGCAGTGGGGGAATTCATCGCGCAGCCATTGGCTTAAACGCTGGTGCGCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCa                                                                                                                                               >  2:522593/1‑143 (MQ=255)       tAACTTCCGCCAGCGGCGCATCGCAGTGGGGGAATTCATCGCGCAGCCATTGGCTTAAACGCTGGTGCGCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCa                                                                                                                                               <  1:522593/143‑1 (MQ=255)            tCCGCCAGCGGCGCATCGCAGTGGGGGAATTCATCGCGCAGCCATTGGCTTAAACGCTGGTGCGCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCttt                                                                                                                                     >  1:510872/1‑148 (MQ=255)                       cgcATCGCAGTGGGGGAATTCATCGCGCAGCCATTGGCTTAAACGCTGGTGCGCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCaa                                                                                                                                              >  3:639050/1‑128 (MQ=255)                       cgcATCGCAGTGGGGGAATTCATCGCGCAGCCATTGGCTTAAACGCTGGTGCGCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCaa                                                                                                                                              <  4:639050/128‑1 (MQ=255)                                    aatttatttgtgagctacctaacggcgtacatgcgcgtccggcaagccacgttgaaacgctgtgtaatactttttcatcacaaattgagtggcataacctgcgcactgacCGCAAg                                                                                                                                             >  4:553725‑M1/111‑116 (MQ=255)                                    aatttatttgtgagctacctaacggcgtacatgcgcgtccggcaagccacgttgaaacgctgtgtaatactttttcatcacaaattgagtggcataacctgcgcactgacCGCAAg                                                                                                                                             <  3:553725‑M1/6‑1 (MQ=255)                                      gAATTCATCGCGCAGCCATTGGCTTAAACGCTGGTGCGCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAg                                                                                                                                             >  3:300595/1‑114 (MQ=255)                                      gAATTCATCGCGCAGCCATTGGCTTAAACGCTGGTGCGCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAg                                                                                                                                             <  4:300595/114‑1 (MQ=255)                                       aaTTCATCGCGCAGCCATTGGCTTAAACGCTGGTGCGCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCa                                                                                                          <  3:109774/148‑1 (MQ=255)                                       aaTTCATCGCGCAGCCATTGGCTTAAACGCTGGTGCGCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCa                                                                                                          >  4:109774/1‑148 (MQ=255)                                             tCGCGCAGCCATTGGCTTAAACGCTGGTGCGCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAgg                                                                                                        >  3:67794/1‑144 (MQ=255)                                             tCGCGCAGCCATTGGCTTAAACGCTGGTGCGCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAgg                                                                                                        <  4:67794/144‑1 (MQ=255)                                              cgcgCAGCCATTGGCTTAAACGCTGGTGCGCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCttt                                                                                                                                     <  3:467829/114‑1 (MQ=255)                                              cgcgCAGCCATTGGCTTAAACGCTGGTGCGCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCttt                                                                                                                                     >  4:467829/1‑114 (MQ=255)                                                      ctaacggcgtacatgcgcgtccggcaagccacgttgaaacgctgtgtaatactttttcatcacaaattgagtggcataacctgcgcactgacCGCaa                                                                                                                                              >  1:726249‑M1/93‑97 (MQ=255)                                                      ctaacggcgtacatgcgcgtccggcaagccacgttgaaacgctgtgtaatactttttcatcacaaattgagtggcataacctgcgcactgacCGCaa                                                                                                                                              <  2:726249‑M1/5‑1 (MQ=255)                                                        aacggcgtacatgcgcgtccggcaagccacgttgaaacgctgtgtaatactttttcatcacaaattgagtggcataacctgcgcactgacCGCAAGGGCGCTTTTGGCGTTGCCCtt                                                                                                                        <  3:364837‑M1/27‑1 (MQ=255)                                                        aacggcgtacatgcgcgtccggcaagccacgttgaaacgctgtgtaatactttttcatcacaaattgagtggcataacctgcgcactgacCGCAAGGGCGCTTTTGGCGTTGCCCtt                                                                                                                        >  4:364837‑M1/91‑117 (MQ=255)                                                          ggCTTAAACGCTGGTGCGCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTtg                                                                                       <  2:510872/148‑1 (MQ=255)                                                              tAAACGCTGGTGCGCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGtgat                                                                                   >  3:1082186/1‑148 (MQ=255)                                                                aaCGCTGGTGCGCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAAtt                                                                                         <  2:227431/140‑1 (MQ=255)                                                                aaCGCTGGTGCGCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAAtt                                                                                         >  1:227431/1‑140 (MQ=255)                                                                            cTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCg                                                                                                                     <  3:1007308/100‑1 (MQ=255)                                                                            cTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCg                                                                                                                     >  4:1007308/1‑100 (MQ=255)                                                                              tCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGaaaaa                                                                             >  4:710998/1‑138 (MQ=255)                                                                              tCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGaaaaa                                                                             <  3:710998/138‑1 (MQ=255)                                                                              tCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGt                                                                           <  4:1016766/140‑1 (MQ=255)                                                                              tCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGt                                                                           >  3:1016766/1‑140 (MQ=255)                                                                              tCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTAcaca                                                                   >  4:458035/1‑148 (MQ=255)                                                                               ccTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAg                                                                  >  4:14965/1‑148 (MQ=255)                                                                                  gTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGcc                                                                                                                           <  4:831054/88‑1 (MQ=255)                                                                                  gTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGcc                                                                                                                           >  3:831054/1‑88 (MQ=255)                                                                                    acgttgaaacgctgtgtaatactttttcatcacaaattgagtggcctaacctgcgcactgacCGCAAGGGCGCTTTTGGCGTTGcc                                                                                                                           >  2:69103‑M1/63‑86 (MQ=255)                                                                                    acgttgaaacgctgtgtaatactttttcatcacaaattgagtggcataacctgcgcactgacCGCAAGGGCGCTTTTGGCGTTGcc                                                                                                                           <  1:69103‑M1/24‑1 (MQ=255)                                                                                     cgtcgGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTc                                                            >  1:18328/1‑148 (MQ=255)                                                                                       tcgGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGt                                                                                                                               <  4:903176/79‑1 (MQ=255)                                                                                       tcgGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGt                                                                                                                               >  3:903176/1‑79 (MQ=255)                                                                                       tcgGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTg                                                                                                                             >  3:463541/1‑81 (MQ=255)                                                                                       tcgGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTg                                                                                                                             <  4:463541/81‑1 (MQ=255)                                                                                        cgGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTtg                                                                                       >  2:959672/1‑118 (MQ=255)                                                                                        cgGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTtg                                                                                       <  1:959672/118‑1 (MQ=255)                                                                                         ggCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACg                                                        >  2:245154/1‑148 (MQ=255)                                                                                             ccGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAAt                                                                                          <  2:924704/110‑1 (MQ=255)                                                                                             ccGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAAt                                                                                          >  1:924704/1‑110 (MQ=255)                                                                                              cGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGc                                                                                                                            <  4:1126590/75‑1 (MQ=255)                                                                                              cGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGc                                                                                                                            >  3:1126590/1‑75 (MQ=255)                                                                                              cGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCaa                                                                                           <  2:132072/108‑1 (MQ=255)                                                                                              cGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCaa                                                                                           >  1:132072/1‑108 (MQ=255)                                                                                               ggAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGaaaa                                                                              <  2:490510/120‑1 (MQ=255)                                                                                               ggAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGaaaa                                                                              >  1:490510/1‑120 (MQ=255)                                                                                               ggAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCtt                                                  <  2:18328/148‑1 (MQ=255)                                                                                                gAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTg                                                 <  4:1082186/148‑1 (MQ=255)                                                                                                  aaTCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTa                                                                          >  1:675071/1‑121 (MQ=255)                                                                                                  aaTCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTa                                                                          <  2:675071/121‑1 (MQ=255)                                                                                                  aaTCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGcc                                               <  3:458035/148‑1 (MQ=255)                                                                                                   aTCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGaaaa                                                                              <  3:268689/116‑1 (MQ=255)                                                                                                   aTCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGaaaa                                                                              >  4:268689/1‑116 (MQ=255)                                                                                                       gTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTtgtg                                                                                     >  1:709832/1‑105 (MQ=255)                                                                                                       gTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTtgtg                                                                                     <  2:709832/105‑1 (MQ=255)                                                                                                           cTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGcc                                                                                                 <  4:195464/89‑1 (MQ=255)                                                                                                           cTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGcc                                                                                                 >  3:195464/1‑89 (MQ=255)                                                                                                             ggCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTtgtg                                                                                     >  1:768094/1‑99 (MQ=255)                                                                                                             ggCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTtgtg                                                                                     <  2:768094/99‑1 (MQ=255)                                                                                                             ggCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTtg                                                                                       >  3:633460/1‑97 (MQ=255)                                                                                                             ggCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTtg                                                                                       <  4:633460/97‑1 (MQ=255)                                                                                                             ggCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATg                                    >  1:687467/1‑148 (MQ=255)                                                                                                               cAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCg                                                                >  4:585489/1‑118 (MQ=255)                                                                                                               cAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCg                                                                <  3:585489/118‑1 (MQ=255)                                                                                                                 gTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACg                                <  3:14965/148‑1 (MQ=255)                                                                                                                  ttATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACGc                               >  1:44324/1‑148 (MQ=255)                                                                                                                  cacaaattgagtggcataacctgcgcactgacCGCAAGGGCGCTTTTGGCGTTGCCCt                                                                                                                         >  4:522824‑M1/33‑58 (MQ=255)                                                                                                                  cacaaattgagtggcataacctgcgcactgacCGCAAGGGCGCTTTTGGCGTTGCCCt                                                                                                                         <  3:522824‑M1/26‑1 (MQ=255)                                                                                                                         ccgccAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACGCCGTTAgg                        <  2:44324/148‑1 (MQ=255)                                                                                                                              ggcataacctgcgcactgacCGCAAGGGCGCTTTTGGCGTTGccc                                                                                                                          <  3:122233‑M1/25‑1 (MQ=255)                                                                                                                              ggcataacctgcgcactgacCGCAAGGGCGCTTTTGGCGTTGccc                                                                                                                          >  4:122233‑M1/21‑45 (MQ=255)                                                                                                                                     cGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACGCCGTTAGGTAGCTCACaaat            >  1:1067918/1‑148 (MQ=255)                                                                                                                                     cGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACGCCGTTAGGTAGCTCACaaat            >  2:1014916/1‑148 (MQ=255)                                                                                                                                        tGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGc                                                                 <  3:182514/92‑1 (MQ=255)                                                                                                                                        tGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGc                                                                 >  4:182514/1‑92 (MQ=255)                                                                                                                                           cAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACGCCGTTAGGTAGCTCACaaataaa         <  1:126156/145‑1 (MQ=255)                                                                                                                                           cAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACGCCGTTAGGTAGCTCACaaataaa         >  2:126156/1‑145 (MQ=255)                                                                                                                                               cAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTAt                                                                                                    <  1:883264/50‑1 (MQ=255)                                                                                                                                               cAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTAt                                                                                                    >  2:883264/1‑50 (MQ=255)                                                                                                                                               cAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTtgtg                                                                                     <  4:335687/65‑1 (MQ=255)                                                                                                                                               cAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTtgtg                                                                                     >  3:335687/1‑65 (MQ=255)                                                                                                                                               cAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACGCCGTTAGGTAGCTCACAAATAAATTCcaca  >  3:1089131/1‑148 (MQ=255)                                                                                                                                                 gcgcAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACGCCGTTAGGTAGCTca                 <  4:1102172/131‑1 (MQ=255)                                                                                                                                                 gcgcAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACGCCGTTAGGTAGCTca                 >  3:1102172/1‑131 (MQ=255)                                                                                                                                                  CGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGt                                   >  2:420386‑M1/1‑112 (MQ=255)                                                                                                                                                  CGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGt                                   <  1:420386‑M1/112‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                 CAGATTTAACTTCCGCCAGCGGCGCATCGCAGTGGGGGAATTCATCGCGCAGCCATTGGCTTAAACGCTGGTGCGCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACGCCGTTAGGTAGCTCACAAATAAATTCCACA  >  NC_000913/4141921‑4142210

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.