| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4633095 | 26 (0.280) | 6 (0.070) | 4/184 | NT | 16.5% | noncoding (5/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | = 4633163 | 37 (0.430) | noncoding (73/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
CGAAATGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATAC > NC_000913/4632951‑4633239 | cgAAATGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCt > 2:861520/1‑148 (MQ=255) tGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGAtgc > 1:705680/1‑146 (MQ=255) aGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGa < 4:297608/148‑1 (MQ=255) ccAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGa < 4:722781/141‑1 (MQ=255) ccAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGa > 3:722781/1‑141 (MQ=255) aGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTg < 1:861520/148‑1 (MQ=255) aaTGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATc > 3:539417/1‑148 (MQ=255) gacgaTTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGa < 1:856431/134‑1 (MQ=255) gacgaTTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGa > 2:856431/1‑134 (MQ=255) ttACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGaa < 4:539417/148‑1 (MQ=255) aTCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGa > 1:82197/1‑87 (MQ=255) aTCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGa < 2:82197/87‑1 (MQ=255) tCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATgcggcg < 1:993728/133‑1 (MQ=255) tCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATgcggcg > 2:993728/1‑133 (MQ=255) cAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTccta < 4:1123184‑M2/148‑5 (MQ=255) cGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATgcg > 1:8613/1‑107 (MQ=255) cGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATgcg < 2:8613/107‑1 (MQ=255) gTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGacggataaggcgttcacgccgcatccggcattcggtgcacgatgcctgatgcgccacgtcttatcaggcctacaa > 2:302267‑M1/1‑57 (MQ=255) gTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGacggataaggcgttcacgccgcatccggcattcggtgcacgatgcctgatgcgccacgtcttatcaggcctacaa < 1:302267‑M1/132‑76 (MQ=255) gTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATAc > 2:686153/1‑136 (MQ=255) gTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATAc < 1:686153/136‑1 (MQ=255) gCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGt < 3:1123184/148‑1 (MQ=255) gAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCa > 1:286864/1‑58 (MQ=255) gAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCa < 2:286864/58‑1 (MQ=255) aaGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGccggataaggcgttcacgccgcatccggcattcggtgcacgatgcctgatgcgccacgtctt < 4:714349‑M1/97‑63 (MQ=255) aaGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGccggataaggcgttcacgccgcatccggcattcggtgcacgatgcctgatgcgccacgtctt > 3:714349‑M1/1‑35 (MQ=255) aaGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGacggataaggcgttcacgccgcatccggcattcggtgcacgatgcctgatgcgccacgtctt > 4:803035‑M1/1‑35 (MQ=255) aaGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGacggataaggcgttcacgccgcatccggcattcggtgcacgatgcctgatgcgccacgtctt < 3:803035‑M1/97‑63 (MQ=255) tgtTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGaa > 2:24421/1‑67 (MQ=255) tgtTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGaa < 1:24421/67‑1 (MQ=255) tGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGt > 4:569944/1‑94 (MQ=255) tGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGt < 3:569944/94‑1 (MQ=255) ttgattTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTaa < 3:372092/98‑1 (MQ=255) ttgattTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTaa > 4:372092/1‑98 (MQ=255) tttGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATAcc < 4:63004/88‑1 (MQ=255) tttGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATAcc > 3:63004/1‑88 (MQ=255) tttGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAg > 4:301729/1‑121 (MQ=255) tttGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAg < 3:301729/121‑1 (MQ=255) ttGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTcctacaaaatcaatcgcttttcagcaacacctcttccagccactggcgcagctcgac > 2:302267‑M2/1‑75 (MQ=255) ttGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTcctacaaaatcaatcgcttttcagcaacacctcttccagccactggcgcagctcgac < 1:302267‑M2/132‑58 (MQ=255) tAGGacggataaggcgttcacgccgcatccggcattcggtgcacgatgcctgatgcgccacgtcttatcaggcctacaaaatcaatcgcttttcagcaacacctcttccagccactggcgcagctcgacgggcgcggctttcaggctg < 4:1123184‑M1/148‑145 (MQ=255) gCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGAcgc > 3:680505/1‑118 (MQ=255) gCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGAcgc < 4:680505/118‑1 (MQ=255) | CGAAATGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAATACCCGTAATTTCAATATGTTTGGTAGGCATGATAAGACGCGGCAGCGTCGCATCAGGCGCTTAATAC > NC_000913/4632951‑4633239 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |