New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 72220NA (NA)24 (0.280) 14/186 NT 15.9% noncoding (85/85 nt) REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3736234 = 127 (1.460)noncoding (81/171 nt) REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences

Only 100 of 191 total aligned reads displayed.

GTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATA  >  NC_000913/3736089‑3736334
                                                                                                                                                 |                                                                                                    
gTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTa                                                                                                    >  4:454683/1‑148 (MQ=255)
                 tGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCa                                                                                         >  1:1000908/1‑142 (MQ=255)
                  gACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTAc                                                                                                   >  3:542501/1‑131 (MQ=255)
                       gacgCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCa                                                                             <  3:454683/148‑1 (MQ=255)
                             aaaaGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTAcc                                                                                                  <  3:326118/121‑1 (MQ=255)
                                  agTATCGCGATGTAAATAGCGAGGTCATGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCt                                                                  <  4:524264/148‑1 (MQ=255)
                                   gTATCGCGATGTAAATAGCGAGGTCATGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCa                                                                                             <  3:196881/120‑1 (MQ=255)
                                   gTATCGCGATGTAAATAGCGAGGTCATGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCtt                                                                 <  1:531842/148‑1 (MQ=255)
                                    tATCGCGATGTAAATAGCGAGGTCATGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGc                                                                              <  3:439963/134‑1 (MQ=255)
                                            tGTAAATAGCGAGGTCATGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCa                                                                                         <  3:301192/115‑1 (MQ=255)
                                               aaaTAGCGAGGTCATGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCAc                                                                            <  2:390540/125‑1 (MQ=255)
                                                aaTAGCGAGGTCATGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGc                                                                              <  3:583250/122‑1 (MQ=255)
                                                aaTAGCGAGGTCATGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGc                                                                              >  4:583250/1‑122 (MQ=255)
                                                 aTAGCGAGGTCATGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAgg                                                             <  4:388504/138‑1 (MQ=255)
                                                    gCGAGGTCATGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGAt                                                                                     >  4:512164/1‑111 (MQ=255)
                                                    gCGAGGTCATGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGAt                                                                                     <  3:512164/111‑1 (MQ=255)
                                                       aGGTCATGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAg                                                      >  2:434787/1‑139 (MQ=255)
                                                         gTCATGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGc                                                                              <  2:10642/113‑1 (MQ=255)
                                                         gTCATGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGc                                                                              >  1:10642/1‑113 (MQ=255)
                                                           cATGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGc                                             >  3:103121/1‑144 (MQ=255)
                                                            aTGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGc                                             >  3:1077731/1‑143 (MQ=255)
                                                            aTGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGc                                             <  4:1077731/143‑1 (MQ=255)
                                                             tgttgtAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTa                                                                                                    >  4:120000/1‑87 (MQ=255)
                                                                   aGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGc                                             <  4:1046238/136‑1 (MQ=255)
                                                                      gatgatGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCt                                                                  <  1:996964/112‑1 (MQ=255)
                                                                      gatgatGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCt                                                                  >  2:996964/1‑112 (MQ=255)
                                                                       atgatgAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTc                                                                <  1:498035/113‑1 (MQ=255)
                                                                       atgatgAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGc                                             >  1:71239/1‑132 (MQ=255)
                                                                       atgatgAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTaaaa                             >  4:981179/1‑148 (MQ=255)
                                                                         gatgaGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGc                                                                              <  3:596873/97‑1 (MQ=255)
                                                                         gatgaGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGc                                                                              >  4:596873/1‑97 (MQ=255)
                                                                         gatgaGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCa                                                                             <  4:193471/98‑1 (MQ=255)
                                                                            gagaATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAgg                                                             <  2:708998/111‑1 (MQ=255)
                                                                             agaATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAAc                                                >  4:776584/1‑123 (MQ=255)
                                                                             agaATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGcc                                            <  2:363140/127‑1 (MQ=255)
                                                                             agaATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTg                                          <  2:208332/129‑1 (MQ=255)
                                                                             agaATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTg                                          >  1:208332/1‑129 (MQ=255)
                                                                             agaATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTg                                          <  2:642409/129‑1 (MQ=255)
                                                                             agaATTGTCGACGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCTAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAAc                                                <  3:776584/123‑1 (MQ=255)
                                                                               aaTTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCa                                                                             >  4:275549/1‑92 (MQ=255)
                                                                                 ttGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGt                                                        >  3:520990/1‑111 (MQ=255)
                                                                                    tCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGAc                <  3:981179/148‑1 (MQ=255)
                                                                                          tCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCaa                                                 <  2:80406/109‑1 (MQ=255)
                                                                                               tCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCtt                                                                 >  1:157578/1‑88 (MQ=255)
                                                                                               tCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCtt                                                                 <  2:157578/88‑1 (MQ=255)
                                                                                                cAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTaaaa                             <  2:496256/123‑1 (MQ=255)
                                                                                                  ggTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGc                                                     >  1:303805/1‑97 (MQ=255)
                                                                                                  ggTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGc                                                     <  2:303805/97‑1 (MQ=255)
                                                                                                   gTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGc                                                            <  1:123940/89‑1 (MQ=255)
                                                                                                   gTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGc                                                            >  2:123940/1‑89 (MQ=255)
                                                                                                   gTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTgag                                        >  3:259052/1‑109 (MQ=255)
                                                                                                    tAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTc                                                                <  2:942234/84‑1 (MQ=255)
                                                                                                    tAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTc                                                                >  1:942234/1‑84 (MQ=255)
                                                                                                     aaCGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACaa                                    <  1:199804/111‑1 (MQ=255)
                                                                                                     aaCGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACaa                                    >  2:199804/1‑111 (MQ=255)
                                                                                                         cTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGcc                         >  1:428586/1‑118 (MQ=255)
                                                                                                             gTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCaa                                                 <  4:1003813/90‑1 (MQ=255)
                                                                                                                    tcggataaggcgttcacgccgcatccgacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCa                                                               <  4:243766‑M2/40‑1 (MQ=255)
                                                                                                                    tcggataaggcgttcacgccgcatccgacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACaa                                    <  1:355479‑M2/67‑1 (MQ=255)
                                                                                                                     cggataaggcgttcacgccgcatccgacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTgag                                        <  1:262312‑M2/63‑1 (MQ=255)
                                                                                                                       gataaggcgttcacgccgcatccgacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTaaaaa                            >  2:238545‑M2/27‑101 (MQ=255)
                                                                                                                        ataaggcgttcacgccgcatccgacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCt                                                           <  3:1125281‑M2/44‑1 (MQ=255)
                                                                                                                        ataaggcgttcacgccgcatccgacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCt                                                           >  4:1125281‑M2/26‑69 (MQ=255)
                                                                                                                        ataaggcgttcacgccgcatccgacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTaaaa                             >  4:908527‑M2/26‑99 (MQ=255)
                                                                                                                        ataaggcgttcacgccgcatccgacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTaaaa                             >  3:862604‑M2/26‑99 (MQ=255)
                                                                                                                        ataaggcgttcacgccgcatccgacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTaaaa                             <  3:908527‑M2/74‑1 (MQ=255)
                                                                                                                        ataaggcgttcacgccgcatccgacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTaaaa                             >  4:454252‑M2/26‑99 (MQ=255)
                                                                                                                        ataaggcgttcacgccgcatccgacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTaaaa                             <  4:862604‑M2/74‑1 (MQ=255)
                                                                                                                        aTGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGAc                <  1:471333/112‑1 (MQ=255)
                                                                                                                         taaggcgttcacgccgcatccgacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTTGTAGCTCAACTGCCTGAGACAAAGTaaaa                             <  4:1046320‑M2/74‑1 (MQ=255)
                                                                                                                         taaggcgttcacgccgcatccgacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGcc                                            <  2:269309‑M2/59‑1 (MQ=255)
                                                                                                                         taaggcgttcacgccgcatccgacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTaaaa                             >  3:1046320‑M2/25‑98 (MQ=255)
                                                                                                                         taaggcgttcacgccgcatccgacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCg                  >  1:813728‑M2/25‑109 (MQ=255)
                                                                                                                         taaggcgttcacgccgcatccgacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCg                  <  2:813728‑M2/85‑1 (MQ=255)
                                                                                                                             gcgTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGc                          <  2:531572/97‑1 (MQ=255)
                                                                                                                                tGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACcaaca                                                                       >  1:1030235/1‑49 (MQ=255)
                                                                                                                                tGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACcaaca                                                                       <  2:1030235/49‑1 (MQ=255)
                                                                                                                                tGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGt        >  1:588463/1‑112 (MQ=255)
                                                                                                                                tGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGt        <  2:588463/112‑1 (MQ=255)
                                                                                                                                       cTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTAt                     <  1:685300/92‑1 (MQ=255)
                                                                                                                                       cTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGa                 >  4:305450/1‑96 (MQ=255)
                                                                                                                                        ttATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGcc                                            <  3:486778/68‑1 (MQ=255)
                                                                                                                                        ttATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGcc                                            >  4:486778/1‑68 (MQ=255)
                                                                                                                                        ttATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTg                                          <  1:377408/70‑1 (MQ=255)
                                                                                                                                        ttATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACaa                                    <  3:698046/76‑1 (MQ=255)
                                                                                                                                        ttATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACaa                                    >  4:698046/1‑76 (MQ=255)
                                                                                                                                        ttATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACa           <  3:16960/101‑1 (MQ=255)
                                                                                                                                         tATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGa                 >  2:1008808/1‑94 (MQ=255)
                                                                                                                                         tATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGa                 <  1:1008808/94‑1 (MQ=255)
                                                                                                                                           tccgacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGcc                         >  2:563863‑M2/7‑84 (MQ=255)
                                                                                                                                           tccgacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGcc                         <  1:563863‑M2/78‑1 (MQ=255)
                                                                                                                                           tccgacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGcc                         <  1:900265‑M2/78‑1 (MQ=255)
                                                                                                                                           tccgacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGcc                         >  2:900265‑M2/7‑84 (MQ=255)
                                                                                                                                            ccgacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTAt                     >  4:258589‑M2/6‑87 (MQ=255)
                                                                                                                                              gacCTACCCGCCAGGCATGATGAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAGAGCCTTATCCGACTGACAAg         <  1:810365‑M2/94‑1 (MQ=255)
                                                                                                                                              gacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTTGTCAGTCGGATa  >  1:275562‑M2/4‑104 (MQ=255)
                                                                                                                                              gacCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGt        <  3:1140413‑M2/95‑1 (MQ=255)
                                                                                                                                               acCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGc                          >  3:250418‑M2/3‑79 (MQ=255)
                                                                                                                                                cCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTg                                              <  2:318688‑M2/57‑1 (MQ=255)
                                                                                                                                                cCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTg                                              >  1:318688‑M2/2‑58 (MQ=255)
                                                                                                                                                 |                                                                                                    
GTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAGCGATGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTGACAAGTCGGATA  >  NC_000913/3736089‑3736334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.