New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 349852	27 (0.290)	10 (0.120)	6/186	NT	26.6%	noncoding (248/365 nt)	REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences	REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
	?	NC_000913	= 349869	30 (0.350)					noncoding (265/365 nt)	REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences	REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences

ACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATC  >  NC_000913/349732‑349976                                                                                                                                          |                                                                                                            aCGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCat                                                                                                           >  1:178223‑M2/1‑138 (MQ=255) aCGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCat                                                                                                           <  2:178223‑M2/140‑3 (MQ=255)          aCTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTg                                                                                          <  4:787756/148‑1 (MQ=37)           cTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGa                                                                                         >  3:787756/1‑148 (MQ=37)                                   cATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCatccg                                                                                                        >  1:120287‑M2/1‑104 (MQ=255)                                   cATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCatccg                                                                                                        <  2:120287‑M2/109‑6 (MQ=255)                                               tCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGcc                                                                                            >  4:853338/1‑109 (MQ=32)                                               tCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGcc                                                                                            <  3:853338/109‑1 (MQ=32)                                                      aCCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGtgaactgaa                                              >  4:1081933/1‑148 (MQ=35)                                                               tGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTc                                     >  1:76262/1‑148 (MQ=35)                                                               tGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTc                                     >  3:803658/1‑148 (MQ=34)                                                                 aTGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCgg                                   <  3:70486/148‑1 (MQ=35)                                                                 aTGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCgg                                   >  4:70486/1‑148 (MQ=35)                                                                 aTGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCgg                                   <  2:76262/148‑1 (MQ=35)                                                                      ccgcTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAg                              <  4:803658/148‑1 (MQ=34)                                                                                 aCTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATa                                >  4:141939/1‑135 (MQ=32)                                                                                 aCTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATa                                <  3:141939/135‑1 (MQ=32)                                                                                 aCTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGt                   <  3:1081933/148‑1 (MQ=32)                                                                                   ttATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGt                                      <  1:558796/127‑1 (MQ=32)                                                                                   ttATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGt                                      >  2:558796/1‑127 (MQ=33)                                                                                    tATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGtga                                                    <  4:604251/112‑1 (MQ=11)                                                                                    tATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGtga                                                    >  3:604251/1‑112 (MQ=11)                                                                                                      cACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGt                                          <  2:380914/104‑1 (MQ=32)                                                                                                      cACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGt                                          >  1:380914/1‑104 (MQ=32)                                                                                                        cTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGt                   >  1:1048408/1‑125 (MQ=32)                                                                                                        cTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGt                   <  2:1048408/125‑1 (MQ=32)                                                                                                            aCTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGt                   <  3:138744/121‑1 (MQ=33)                                                                                                            aCTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGt                   >  4:138744/1‑121 (MQ=32)                                                                                                                     cGGATAAGACGCATAGCGTCGCatccgacctacagttcagttcaccccgtaggcctgataagtcgcgtcagcggcgcatcaggcatcggttgtc                                     <  3:1092443‑M2/94‑73 (MQ=255)                                                                                                                     cGGATAAGACGCATAGCGTCGCatccgacctacagttcagttcaccccgtaggcctgataagtcgcgtcagcggcgcatcaggcatcggttgtc                                     >  4:1092443‑M2/1‑22 (MQ=255)                                                                                                                        aTAAGACGCATAGCGTCGCatccgacctacagttcagtgcaccccgtcggcctgata                                                                       <  2:798982‑M2/57‑39 (MQ=255)                                                                                                                        aTAAGACGCATAGCGTCGCatccgacctacagttcagtgcaccccgtaggcctgata                                                                       >  1:798982‑M2/1‑19 (MQ=255)                                                                                                                         tAAGACGCATAGCGTCGCatccgacctacagttcagtgcaccccgtaggcctgataagtcgcg                                                                >  1:175403‑M2/1‑18 (MQ=255)                                                                                                                         tAAGACGCATAGCGTCGCatccgacctacagttcagtgcaccccgtaggcctgataagtcgcg                                                                <  2:175403‑M2/63‑46 (MQ=255)                                                                                                                             aCGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGTTCGGATAAGACGCATAGCGTCGCATCCGACAACAAtc  >  3:1105320/1‑121 (MQ=25)                                                                                                                             aCGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGt                                      <  1:209293/85‑1 (MQ=33)                                                                                                                             aCGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGt                                      >  2:209293/1‑85 (MQ=33)                                                                                                                             aCGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAAtc  <  4:1105320/121‑1 (MQ=37)                                                                                                                                cATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGtgaactgaa                                              <  1:613882/74‑1 (MQ=35)                                                                                                                                cATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGtgaactgaa                                              >  2:613882/1‑74 (MQ=34)                                                                                                                                  tAGCGTCGCatccgacctacagttcagtgcaccccgtaggcctgat                                                                        >  4:860211‑M2/1‑9 (MQ=255)                                                                                                                                  tAGCGTCGCatccgacctacagttcagtgcaccccgtaggcctgat                                                                        >  4:1096465‑M2/1‑9 (MQ=255)                                                                                                                                  tAGCGTCGCatccgacctacagttcagtgcaccccgtaggcctgat                                                                        <  3:860211‑M2/46‑38 (MQ=255)                                                                                                                                  tAGCGTCGCatccgacctacagttcagtgcaccccgtaggcctgat                                                                        <  3:1096465‑M2/46‑38 (MQ=255)                                                                                                                                          |                                                                                                            ACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACAATC  >  NC_000913/349732‑349976

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.