New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3217434 =	NA (NA)	5 (0.060)	4/186	NT	NA	noncoding (1/89 nt)	REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	3217467 =	NA (NA)					noncoding (34/89 nt)	REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences

GCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCAT  >  NC_000913/3217376‑3217609                                                                                            |                                                                                                                                               gcTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGcc                                                                                                                                                >  1:519634/1‑92 (MQ=255) gcTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGcc                                                                                                                                                <  2:519634/92‑1 (MQ=255)    tttGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAg                                                                                                      <  1:693885/131‑1 (MQ=255)    tttGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAg                                                                                                      >  2:693885/1‑131 (MQ=255)              cGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAg                                                                                                               <  1:418092/112‑1 (MQ=255)              cGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAg                                                                                                               >  2:418092/1‑112 (MQ=255)                          aaTCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAg                                                                                           >  1:636914/1‑120 (MQ=255)                          aaTCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAg                                                                                           <  2:636914/120‑1 (MQ=255)                                        ccAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTcc                                                                               >  4:251789/1‑118 (MQ=255)                                        ccAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTcc                                                                               <  3:251789/118‑1 (MQ=255)                                                      cAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAAccgc                                                                         <  4:397465/110‑1 (MQ=255)                                                      cAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAAccgc                                                                         >  3:397465/1‑110 (MQ=255)                                                        aTTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAgcat                                                                                                   <  4:991090/82‑1 (MQ=255)                                                        aTTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAgcat                                                                                                   >  3:991090/1‑82 (MQ=255)                                                            ccggataaggcgcgtcaagcgtcgcatccggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTa                                                     >  3:558676‑M2/33‑124 (MQ=255)                                                            ccggataaggcgcgtcaagcgtcgcatccggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTa                                                     <  4:558676‑M2/92‑1 (MQ=255)                                                             CGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGCCACCGCGTCTTcc                            <  3:464359‑M1/148‑1 (MQ=255)                                                                ataaggcgcgtcaagcgtcgcttccggcCTACACCCGCTACACACCCCGCGGGCCTGACAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCAGGATCCGTCATACCGATTAATGCAGTACCGTCACCGCGTCTTGCAGt                         >  4:961140‑M2/29‑148 (MQ=255)                                                                ataaggcgcgtcaagcgtcgcatccggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCAt                                                                                       <  4:1029060‑M2/58‑1 (MQ=255)                                                                ataaggcgcgtcaagcgtcgcatccggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCAt                                                                                       >  3:1029060‑M2/29‑86 (MQ=255)                                                                ATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATg                                                                                                            <  3:680515‑M1/65‑1 (MQ=255)                                                                ATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATg                                                                                                            >  4:680515‑M1/1‑65 (MQ=255)                                                                     aCGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTa                                                     >  3:1030870/1‑115 (MQ=255)                                                                     aCGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTa                                                     <  4:1030870/115‑1 (MQ=255)                                                                        cTTGACGCGCCTTATCCGGCCTACACCCGCTACTCACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCTTCACCGCGt                                 <  3:69861/132‑1 (MQ=255)                                                                        cTTGACGCGCCTTATCCGGCCTACACCCGCTACTCACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGt                                 >  4:69861/1‑132 (MQ=255)                                                                        cTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGgc                 >  4:404904/1‑148 (MQ=255)                                                                             cgcgCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTc                                                                                <  3:530969/80‑1 (MQ=255)                                                                             cgcgCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTc                                                                                >  4:530969/1‑80 (MQ=255)                                                                                 ccTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGttt        <  3:404904/148‑1 (MQ=255)                                                                                  cTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTaa                                                    <  4:121814/103‑1 (MQ=255)                                                                                  cTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTaa                                                    >  3:121814/1‑103 (MQ=255)                                                                                    tATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTa                                                     >  3:769086/1‑100 (MQ=255)                                                                                    tATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTa                                                     <  4:769086/100‑1 (MQ=255)                                                                                       ccggcCTACACCCGCTACACACCCCGCAGGCCAGATAAGATGCGCCAGCATCGCATCAGGCCTTGTGCTCCAACCGCCGGATCCGACATAACGATTAATGCAGTCCCGTCACAGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCAt  <  3:961140‑M2/143‑1 (MQ=255)                                                                                          gcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGt                         >  2:645367‑M2/3‑122 (MQ=255)                                                                                          gcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGt                         <  1:645367‑M2/120‑1 (MQ=255)                                                                                            |                                                                                                                                               GCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCAT  >  NC_000913/3217376‑3217609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.