BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3327316 =	117 (1.250)	10 (0.110)	8/190	NT	8.9%	coding (349/630 nt)	rlmE	23S rRNA U2552 2'‑O‑ribose methyltransferase, SAM‑dependent
*	?	NC_000913	3327340 =	93 (1.050)	10 (0.110)	8/190	NT	8.9%	coding (325/630 nt)	rlmE	23S rRNA U2552 2'‑O‑ribose methyltransferase, SAM‑dependent

Only 100 of 136 total aligned reads displayed.

GCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATAGGTAAAAGATCGCAAGCGATGATGCGGCCTTTGCCGCCAATTTGGGTGACCACATATTGTG  >  NC_000913/3327196‑3327468

gcgcTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGc                                                                                                                               <  4:1013294/148‑1 (MQ=255)

 cgcTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCt                                                                                                                              <  1:1113037/148‑1 (MQ=255)

 cgcTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCt                                                                                                                              >  3:1104292/1‑148 (MQ=255)

 cgcTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCt                                                                                                                              >  2:1015264/1‑148 (MQ=255)

      aTACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTtcat                                                                                                                         <  4:540788/148‑1 (MQ=255)

        aCATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTtcatca                                                                                                                       >  2:74372/1‑148 (MQ=255)

           tCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCtt                                                                                                                             <  4:284340/139‑1 (MQ=255)

           tCACGACACATTTCTAGCGCCAGCTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCtt                                                                                                                             >  3:284340/1‑139 (MQ=255)

                acacATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGtt                                                                                                                 <  3:882905/146‑1 (MQ=255)

                acacATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTtca                                                                                                               >  3:336769/1‑148 (MQ=255)

                 cacaTTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGc                                                                                                                               <  4:247053/131‑1 (MQ=255)

                 cacaTTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTtcat                                                                                                              <  1:440889/148‑1 (MQ=255)

                  gcaaaggccgcatcatcgcttgcgatcttttacctatggatcctatcgttggtgtggactttcttcagggcgattttcgtgatgaactggtgatgaaagcacTGCTGTCGCCAACGCGCTCcagcag                                                                                                                                  <  3:199304‑M1/25‑1 (MQ=255)

                  gcaaaggccgcatcatcgcttgcgatcttttacctatggatcctatcgttggtgtggactttcttcagggcgattttcgtgatgaactggtgatgaaagcacTGCTGTCGCCAACGCGCTCcagcag                                                                                                                                  >  4:199304‑M1/103‑127 (MQ=255)

                   caTTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGc                                                                                                                               <  3:350838/129‑1 (MQ=255)

                   caTTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGc                                                                                                                               >  4:350838/1‑129 (MQ=255)

                     tttCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCAc                                                                                                                      <  3:526389/136‑1 (MQ=255)

                     tttCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCAc                                                                                                                      >  4:526389/1‑136 (MQ=255)

                     tttCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACg                                                                                                          >  3:54677/1‑148 (MQ=255)

                      ttCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACgt                                                                                                         >  2:833867/1‑147 (MQ=255)

                         tAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACgttcg                                                                                                      <  1:833867/148‑5 (MQ=255)

                            cgcCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCg                                                                                                   >  1:656804/1‑148 (MQ=255)

                             gcCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGc                                                                                                  <  4:54677/148‑1 (MQ=255)

                                aGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCt                                                                                               <  1:74372/148‑1 (MQ=255)

                                 gTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTg                                                                                              >  3:653443/1‑148 (MQ=255)

                                   tCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCAcc                                                                                                                     >  3:38493/1‑123 (MQ=255)

                                   tCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTgaa                                                                                            <  2:656804/148‑1 (MQ=255)

                                     caccaGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCg                                                                                                   >  2:586891/1‑139 (MQ=255)

                                     caccaGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCg                                                                                                   <  1:586891/139‑1 (MQ=255)

                                      accaGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGt                                                                                                                                 <  4:632109/108‑1 (MQ=255)

                                      accaGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGt                                                                                                                                 >  3:632109/1‑108 (MQ=255)

                                      accaGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCAcc                                                                                                                     <  1:644442/120‑1 (MQ=255)

                                      accaGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTgaagaa                                                                                         >  2:567403/1‑148 (MQ=255)

                                      accaGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTgaagaa                                                                                         >  3:453175/1‑148 (MQ=255)

                                         aGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTga                                                                                             >  4:380499/1‑141 (MQ=255)

                                         aGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGt                                                                                      <  4:653443/148‑1 (MQ=255)

                                         aGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGt                                                                                      <  4:453175/148‑1 (MQ=255)

                                          gATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTc                                                                                     >  4:522675/1‑148 (MQ=255)

                                           aTACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTcc                                                                                    <  4:336769/148‑1 (MQ=255)

                                           aTACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTcc                                                                                    <  1:1015264/148‑1 (MQ=255)

                                                tGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTtcat                                                                                                              >  4:40813/1‑117 (MQ=255)

                                                tGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTtcat                                                                                                              <  3:40813/117‑1 (MQ=255)

                                                    aCGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACg                                                                           <  1:866445/148‑1 (MQ=255)

                                                     cGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTtcatc                                                                                                             >  4:916252/1‑113 (MQ=255)

                                                     cGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTtcatc                                                                                                             <  3:916252/113‑1 (MQ=255)

                                                      tggatcctatcgttggtgtggactttcttcagggcgattttcgtgatgaactggtgatgaaagcacTGCTGTCGCCAACGCGCTCCAGCAGTGc                                                                                                                               <  4:349547‑M1/28‑1 (MQ=255)

                                                       ggatcctatcgttggtgtggactttcttcagggcgattttcgtgatgaactggtgatgaaagcacTGCTGTCGCCAACGCGCTCCAGCAGTGc                                                                                                                               >  4:1017616‑M1/66‑93 (MQ=255)

                                                               tcgttggtgtggactttcttcagggcgattttcgtgatgaactggtgatgaaagcacTGCTGTCGCCAACGCGCTCcagcag                                                                                                                                  <  1:352042‑M1/25‑1 (MQ=255)

                                                               tcgttggtgtggactttcttcagggcgattttcgtgatgaactggtgatgaaagcacTGCTGTCGCCAACGCGCTCcagcag                                                                                                                                  >  2:352042‑M1/58‑82 (MQ=255)

                                                                  ccgccgGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGAt                                                                         >  3:527768/1‑136 (MQ=255)

                                                                           ttCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCAcc                                                                                                                     >  1:197273/1‑83 (MQ=255)

                                                                           ttCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCAcc                                                                                                                     <  2:197273/83‑1 (MQ=255)

                                                                              cGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTg                                                                                              <  4:871836/103‑1 (MQ=255)

                                                                                cTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTga                                                                                             <  4:147292/102‑1 (MQ=255)

                                                                                  cATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATAGGTAAAAGAt                                                     <  1:806077/140‑1 (MQ=255)

                                                                                       ttGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATAGGTAAAAGATCGCAAGCgatgat                                        >  3:474118/1‑148 (MQ=255)

                                                                                         ggTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATAGGTAAAAGATCGCAAGCGATGATGc                                      <  4:474118/148‑1 (MQ=255)

                                                                                           tGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATAGGTAAAAGATCGCAAGCgat                                           >  2:829800/1‑141 (MQ=255)

                                                                                               atatCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATAGGTAAAAGAt                                                     >  1:1109277/1‑127 (MQ=255)

                                                                                                      aCATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAgg                                                                      >  4:443710/1‑103 (MQ=255)

                                                                                                          gACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGAt                                                                         >  3:582634/1‑96 (MQ=255)

                                                                                                          gACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGAt                                                                         <  4:582634/96‑1 (MQ=255)

                                                                                                          gACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGAt                                                                    <  4:252780/101‑1 (MQ=255)

                                                                                                          gACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGAt                                                                    >  3:252780/1‑101 (MQ=255)

                                                                                                           aCAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGt                                                                                                                  >  1:489361/1‑54 (MQ=255)

                                                                                                           aCAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGt                                                                                                                  <  2:489361/54‑1 (MQ=255)

                                                                                                                cTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGc                                                                                                  >  3:469285/1‑65 (MQ=255)

                                                                                                                 tGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGc                                                                                                  <  2:912295/64‑1 (MQ=255)

                                                                                                                 tGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTgaagaa                                                                                         <  1:191366/73‑1 (MQ=255)

                                                                                                                 tGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTgaagaa                                                                                         >  2:191366/1‑73 (MQ=255)

                                                                                                                    gcactgctggagcgcgttggcgacagcaGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATcc                                                                  <  3:1017616‑M2/65‑1 (MQ=255)

                                                                                                                    gcactgctggagcgcgttggcgacagcaGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATcc                                                                  >  4:1017616‑M2/29‑93 (MQ=255)

                                                                                                                    gcactgctggagcgcgttggcgacagcaGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCa                                                                 >  3:349547‑M2/29‑94 (MQ=255)

                                                                                                                       ctgctggagcgcgttggcgacagcaGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGa                                                                          >  2:352042‑M2/26‑82 (MQ=255)

                                                                                                                       ctgctggagcgcgttggcgacagcaGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATAGGTAAAAGATCGCAAGCGATGATGCGGCCTTTgc                             <  3:199304‑M2/102‑1 (MQ=255)

                                                                                                                        tgctggagcgcgttggcgacagcaGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATAGGTAAAAGATCGCAAGCGATGATGCGGCCTTTg                              <  4:188466‑M2/101‑1 (MQ=255)

                                                                                                                        tgctggagcgcgttggcgacagcaGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATAGGTAAAAGATCGCAAGCGATGATGCGGCCTTTg                              >  3:188466‑M2/25‑125 (MQ=255)

                                                                                                                           TGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCca                                                                                   >  4:835329‑M1/1‑69 (MQ=255)

                                                                                                                           TGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCca                                                                                   <  3:582916‑M1/69‑1 (MQ=255)

                                                                                                                           TGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCca                                                                                   <  3:835329‑M1/69‑1 (MQ=255)

                                                                                                                           TGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCca                                                                                   >  4:582916‑M1/1‑69 (MQ=255)

                                                                                                                            GTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATAGGTaaa                                                         >  1:447773‑M1/1‑94 (MQ=255)

                                                                                                                            GTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATAGGTAAAAGATCGCAAGCGATGATGCGGCCTTTgc                             <  2:138282‑M1/122‑1 (MQ=255)

                                                                                                                             tCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATAGGTAAAAGATCGCAAGCGATGATGCGGCCTTTGCCGCCAATTTGGGTGACCACATATtgtg  <  2:678205/148‑1 (MQ=255)

                                                                                                                                ctaaCGCGCTCCAACAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATAGGTAAAAGATCGCaa                                                >  3:365104/3‑99 (MQ=255)

                                                                                                                                ctaaCGCGCTCCAACAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATAGGTAAAAGATCGCaa                                                <  4:365104/97‑1 (MQ=255)

                                                                                                                                cctaCGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTGCACACCAACGATAGGATCTATAGGTAAAAGAt                                                     >  4:722449/4‑94 (MQ=255)

                                                                                                                                ccAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATAGGTAAAAGAt                                                     <  3:722449/94‑1 (MQ=255)

                                                                                                                                   aCGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAg                                                                                       <  2:980339/57‑1 (MQ=255)

                                                                                                                                   aCGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAg                                                                                       >  1:980339/1‑57 (MQ=255)

                                                                                                                                   aCGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGAt                                                                         >  2:983694/1‑71 (MQ=255)

                                                                                                                                   aCGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGAt                                                                         <  1:983694/71‑1 (MQ=255)

                                                                                                                                   aCGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGAt                                                                         >  4:819545/1‑71 (MQ=255)

                                                                                                                                   aCGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGAt                                                                         <  3:819545/71‑1 (MQ=255)

                                                                                                                                          ccAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAg                                                                       <  4:565854/66‑1 (MQ=255)

                                                                                                                                          ccAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAg                                                                       >  3:565854/1‑66 (MQ=255)

                                                                                                                                            agcaGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAgg                                                                      <  4:900973‑M2/61‑1 (MQ=255)

                                                                                                                                            agcaGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAgg                                                                      >  3:900973‑M2/5‑65 (MQ=255)

                                                                                                                                            agcaGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATAGGTAAAAGATCGCAAGCGATGATGCGGCCTTTGCCGCCAATTTGGGTGACCACATATtgtg  <  1:855969‑M2/129‑1 (MQ=255)

                                                                                                                                            agcaGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATAGGTAAAAGATCGCAAGCGATGATGCGGCCTTTGCCGCCAATTTGGGTGACCACATATtgtg  >  2:855969‑M2/5‑133 (MQ=255)

GCGCTAATACATCACGACACATTTCTAGCGCCAGTTCCACCAGATACATGGCACGGGGGATATCCACCGCCGGTGTTCCGCTCATGTTTGGTGCCATATCGGACATGACAACCTGGACTTTGCTGTCGCCAACGCGCTCCAGCAGTGCTTTCATCACCAGTTCATCACGAAAATCGCCCTGAAGAAAGTCCACACCAACGATAGGATCCATAGGTAAAAGATCGCAAGCGATGATGCGGCCTTTGCCGCCAATTTGGGTGACCACATATTGTG  >  NC_000913/3327196‑3327468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.