Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,336,983 G→T 13.6% L17M (CTG→ATG) ‡ adiC ← arginine:agmatine antiporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,336,9830GT13.6% 239.8 / 22.9 73L17M (CTG→ATG) ‡adiCarginine:agmatine antiporter
Reads supporting (aligned to +/- strand):  ref base G (31/32);  new base T (6/4);  total (37/36)
Fisher's exact test for biased strand distribution p-value = 7.36e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.96e-01

CATTTTGGCGTATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGT  >  NC_000913/4336843‑4337101
                                                                                                                                            |                                                                                                                      
cATTTTGGCGTATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGTCACCCTGATGGTGTCg                                                                                                                 <  1:1073273/148‑1 (MQ=255)
                aTCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACtt                                                                                                 >  2:208470/1‑148 (MQ=255)
                 tCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACgggg                                                                                                              >  4:182556/1‑134 (MQ=255)
                 tCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACgggg                                                                                                              <  3:182556/134‑1 (MQ=255)
                         cccAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAg                                                                                                                        >  3:947755/1‑116 (MQ=255)
                         cccAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAg                                                                                                                        <  4:947755/116‑1 (MQ=255)
                                          cGTCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGTCACCCTGATGGTGTCgggg                                                                                                              <  1:377542/109‑1 (MQ=255)
                                          cGTCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGTCACCCTGATGGTGTCgggg                                                                                                              >  2:377542/1‑109 (MQ=255)
                                          cGTCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATa                                                                       <  1:410024/148‑1 (MQ=255)
                                           gTCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGTCACCCTGATGGTGTCg                                                                                                                 <  2:785728/105‑1 (MQ=255)
                                           gTCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGTCACCCTGATGGTGTCg                                                                                                                 >  1:785728/1‑105 (MQ=255)
                                            tCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGTCACCCTGATGGTGTCg                                                                                                                 >  3:485879/1‑104 (MQ=255)
                                            tCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACgg                                                                                                                <  3:657052/105‑1 (MQ=255)
                                            tCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACgg                                                                                                                >  4:657052/1‑105 (MQ=255)
                                            tCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAg                                                                                                        >  4:800626/1‑113 (MQ=255)
                                            tCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGCGATTAAg                                                                                                        <  3:800626/113‑1 (MQ=255)
                                                  accaTCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACg                                                                                                                 <  2:51273/98‑1 (MQ=255)
                                                  accaTCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACg                                                                                                                 >  1:51273/1‑98 (MQ=255)
                                                      tccatAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGGCGGGGAt                                                                                                            <  3:1049377/99‑1 (MQ=255)
                                                      tccatAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGAt                                                                                                            >  4:1049377/1‑99 (MQ=255)
                                                          tAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGTCACCCTGATGGTGTCgg                                                                                                                >  2:523073/1‑91 (MQ=38)
                                                              tGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGTCACCCTGATGGTGTCgg                                                                                                                >  3:503661/1‑87 (MQ=38)
                                                                   aTCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAg                                                                                                                        <  2:247601/74‑1 (MQ=255)
                                                                   aTCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAg                                                                                                                        >  1:247601/1‑74 (MQ=255)
                                                                   aTCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGAt                                                                                                            >  4:708752/1‑86 (MQ=255)
                                                                   aTCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGAt                                                                                                            <  3:708752/86‑1 (MQ=255)
                                                                     cccGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTtg                                                                                               <  3:258144/97‑1 (MQ=255)
                                                                     cccGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTtg                                                                                               >  4:258144/1‑97 (MQ=255)
                                                                       cGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACgggg                                                                                                              >  2:436256/1‑80 (MQ=255)
                                                                       cGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACgggg                                                                                                              <  1:436256/80‑1 (MQ=255)
                                                                           aGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTtgtg                                                                                             <  4:587351/93‑1 (MQ=255)
                                                                           aGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTtgtg                                                                                             >  3:587351/1‑93 (MQ=255)
                                                                                  gCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTa                               >  4:176260/1‑148 (MQ=255)
                                                                                    ctggTTTGCAGGTAACAAAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATTAGCATCCGAAGACATAATTGAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACg                             >  4:376775/3‑148 (MQ=255)
                                                                                             aGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGtcatatcat                    <  1:208470/148‑1 (MQ=255)
                                                                                               gTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGa                                                  >  2:462479/1‑116 (MQ=255)
                                                                                               gTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGa                                                  <  1:462479/116‑1 (MQ=255)
                                                                                                     gAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATatt                                                                     <  2:135349/91‑3 (MQ=255)
                                                                                                     gAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTATGAGCATCAGCATCCGCAGACATAAt                                                                     >  1:135349/1‑91 (MQ=255)
                                                                                                      aaaaaCACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGa                                                                              <  2:866447/81‑1 (MQ=255)
                                                                                                      aaaaaCACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGa                                                                              >  1:866447/1‑81 (MQ=255)
                                                                                                      aaaaaCACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATa                                                                       <  3:971679/88‑1 (MQ=255)
                                                                                                      aaaaaCACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATa                                                                       >  4:971679/1‑88 (MQ=255)
                                                                                                       aaaaCACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCGCTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCAt          <  3:176260/148‑1 (MQ=255)
                                                                                                               tGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATTAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGt  <  3:376775/148‑1 (MQ=255)
                                                                                                                gACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGt  <  2:638223/147‑1 (MQ=255)
                                                                                                                gACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGt  >  1:638223/1‑147 (MQ=255)
                                                                                                                 aCCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGa                                                        <  3:981404/92‑1 (MQ=255)
                                                                                                                 aCCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGa                                                        >  4:981404/1‑92 (MQ=255)
                                                                                                                    ccATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTg                                          <  1:531420/103‑1 (MQ=255)
                                                                                                                    ccATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTg                                          >  2:531420/1‑103 (MQ=255)
                                                                                                                     cATAATATTCCCCGACACCATCAGGGTGACGGGGATTa                                                                                                          >  1:918376/1‑38 (MQ=255)
                                                                                                                     cATAATATTCCCCGACACCATCAGGGTGACGGGGATTa                                                                                                          <  2:918376/38‑1 (MQ=255)
                                                                                                                     cATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTaa                                                                  >  4:257897/1‑78 (MQ=255)
                                                                                                                     cATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTaa                                                                  <  3:257897/78‑1 (MQ=255)
                                                                                                                      ataataTTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAg                                                                            <  3:134759/67‑1 (MQ=255)
                                                                                                                      ataataTTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAg                                                                            >  4:134759/1‑67 (MQ=255)
                                                                                                                      ataataTTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACAt                                                                        <  3:1055777/71‑1 (MQ=255)
                                                                                                                      ataataTTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACAt                                                                        >  4:1055777/1‑71 (MQ=255)
                                                                                                                      ataataTTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTc                                                              <  4:808455/81‑1 (MQ=255)
                                                                                                                      ataataTTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTc                                                              >  3:808455/1‑81 (MQ=255)
                                                                                                                      ataataTTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGtcat                         >  2:853461/1‑118 (MQ=255)
                                                                                                                      ataataTTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGtcat                         <  1:853461/118‑1 (MQ=255)
                                                                                                                       taataTTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGa                                                        >  2:827488/1‑86 (MQ=255)
                                                                                                                       taataTTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGa                                                        <  1:827488/86‑1 (MQ=255)
                                                                                                                       taataTTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTa                               >  3:886930/1‑111 (MQ=255)
                                                                                                                       taataTTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTa                               <  4:886930/111‑1 (MQ=255)
                                                                                                                          taatCCCCGTCACCCTGATGGTGTCGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGAc                                        >  4:307170/4‑99 (MQ=37)
                                                                                                                               cccGTCACCCTGATGGTGTCGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGtc                           <  3:769610/107‑1 (MQ=255)
                                                                                                                                ccGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGagcatcagc                                                                                    <  4:1019739/49‑1 (MQ=255)
                                                                                                                                ccGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGagcatcagc                                                                                    >  3:1019739/1‑49 (MQ=255)
                                                                                                                                  gACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCg                                            <  2:22930/87‑1 (MQ=255)
                                                                                                                                  gACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCg                                            >  1:22930/1‑87 (MQ=255)
                                                                                                                                         tCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCtt                                              >  2:555302/1‑78 (MQ=255)
                                                                                                                                         tCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCtt                                              <  1:555302/78‑1 (MQ=255)
                                                                                                                                          cAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAAtt                                >  4:647692/1‑91 (MQ=255)
                                                                                                                                          cAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAAtt                                <  3:647692/91‑1 (MQ=255)
                                                                                                                                            |                                                                                                                      
CATTTTGGCGTATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGACGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGT  >  NC_000913/4336843‑4337101

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: