| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 75,708 | A→G | 5.8% | L531P (CTG→CCG) | sgrR ← | transcriptional DNA‑binding transcriptional activator of sgrS sRNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 75,708 | 0 | A | G | 5.8% | 291.9 / 5.6 | 88 | L531P (CTG→CCG) | sgrR | transcriptional DNA‑binding transcriptional activator of sgrS sRNA |
| Reads supporting (aligned to +/- strand): ref base A (40/40); new base G (2/3); total (44/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 | |||||||||||
GCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCGCCAGATTCATCTCGCCATTGCGCCAGCGAGCAGCGTCGGCTTGCCAGTCAAT > NC_000913/75578‑75853 | gcACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGt < 2:610250/148‑1 (MQ=255) gCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGt > 1:993847/1‑133 (MQ=255) gCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGt < 4:859383/133‑1 (MQ=255) gCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGt > 3:859383/1‑133 (MQ=255) gCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGt < 2:993847/133‑1 (MQ=255) agaACGGCGTTAGTGTAGTGATTTTGTTATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCa > 4:1135607/1‑142 (MQ=255) agaACGGCGTTAGTGTAGTGATTTTGTTATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCa < 3:1135607/142‑1 (MQ=255) gaACGGCGTTAGTGTAGTGATTTTGTTATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGC‑GGCCTGCGCAt > 4:631386/1‑114 (MQ=255) gaACGGCGTTAGTGTAGTGATTTTGTTATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGC‑GGCCTGCGCAt < 3:631386/114‑1 (MQ=255) aaCGGCGTTAGTGTAGTGATTTTGTTATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAgt < 2:294915/142‑1 (MQ=255) aaCGGCGTTAGCGTAGTGATTTTGTTATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAgt > 1:294915/1‑142 (MQ=255) gtgATTTTGTTATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCg > 1:931906/1‑148 (MQ=255) tgATTTTGTTATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGcc > 3:195099/1‑123 (MQ=255) tgATTTTGTTATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGcc < 4:195099/123‑1 (MQ=255) tttGTTATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCaataa > 3:414596/1‑132 (MQ=255) tttGTTATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCaataa < 4:414596/132‑1 (MQ=255) tGTTATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCt < 2:931906/148‑1 (MQ=255) ttATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCCGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCaataat > 1:261471/1‑129 (MQ=255) ttATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCaataat > 3:723354/1‑129 (MQ=255) ttATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCaataat < 4:723354/129‑1 (MQ=255) ttATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATCCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCaataat < 2:261471/129‑1 (MQ=255) tATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGt < 1:15377/95‑1 (MQ=255) tATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGt > 2:15377/1‑95 (MQ=255) tATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGtaataa > 3:810924/1‑127 (MQ=255) tATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGtaataa < 4:810924/127‑1 (MQ=255) aCCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTg < 2:767301/92‑1 (MQ=255) aCCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTg > 1:767301/1‑92 (MQ=255) cAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCt < 3:56983/95‑1 (MQ=255) cAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCt > 4:56983/1‑95 (MQ=255) cAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAg > 4:441092/1‑109 (MQ=255) cAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAg < 3:441092/109‑1 (MQ=255) cAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTg > 4:787266/1‑136 (MQ=255) cAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTg < 3:787266/136‑1 (MQ=255) aGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATgg < 2:1063566/122‑1 (MQ=255) aGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATgg > 1:1063566/1‑122 (MQ=255) gCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCtt > 4:451525/1‑132 (MQ=255) gCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCtt < 3:451525/132‑1 (MQ=255) cAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAGATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAg < 3:793449/106‑1 (MQ=255) cAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAg > 4:793449/1‑106 (MQ=255) cATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGAt < 1:1019641/95‑1 (MQ=255) cATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGAt > 2:1019641/1‑95 (MQ=255) cATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGt < 1:1000901/141‑1 (MQ=255) cATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGt > 2:1000901/1‑141 (MQ=255) cATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGc > 3:609642/1‑148 (MQ=255) tGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCaa > 1:668415/1‑108 (MQ=255) tGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCaa < 2:668415/108‑1 (MQ=255) tGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGTCCAGt < 4:419968/139‑1 (MQ=255) tGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGt > 3:419968/1‑139 (MQ=255) tGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTg < 1:735983/141‑1 (MQ=255) tGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTg > 2:735983/1‑141 (MQ=255) ccGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGa > 1:728537/1‑87 (MQ=255) ccGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGa < 2:728537/87‑1 (MQ=255) tGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCGcc < 4:609642/148‑1 (MQ=255) cTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGc > 4:523376/1‑92 (MQ=255) cTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGc > 2:382998/1‑92 (MQ=255) cTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGc < 3:523376/92‑1 (MQ=255) cTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGc < 1:382998/92‑1 (MQ=255) cTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCg > 3:929491/1‑110 (MQ=255) cTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCg < 4:929491/110‑1 (MQ=255) aaaTCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCGCCAGATTCATCTCGCCATTgcg < 4:874501/146‑1 (MQ=255) aaaTCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCGCCAGATTCATCTCGCCATTgcg > 3:874501/1‑146 (MQ=255) aaTCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCGcc > 1:345820/1‑125 (MQ=255) aaTCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCGcc < 2:345820/125‑1 (MQ=255) aTCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGaa > 3:373137/1‑56 (MQ=255) aTCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGaa < 4:373137/56‑1 (MQ=255) tCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTg < 1:1054416/93‑1 (MQ=255) tCGAACCAGCAGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTg > 2:1054416/1‑93 (MQ=255) cGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCttt < 2:774854/91‑1 (MQ=255) cGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCttt > 1:774854/1‑91 (MQ=255) cGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGt < 3:377728/104‑1 (MQ=255) cGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGt > 4:377728/1‑104 (MQ=255) cGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCGc < 4:538342/121‑1 (MQ=255) cGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCGc > 3:538342/1‑121 (MQ=255) ccAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCt > 1:69809/1‑85 (MQ=255) ccAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCt < 2:69809/85‑1 (MQ=255) ccAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCGCCAGATTCATCTCGCCATTGCGCCAGCGagca > 1:880458/1‑148 (MQ=255) aGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTgg > 4:971781/1‑85 (MQ=255) aGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTgg < 3:971781/85‑1 (MQ=255) ttCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCGCCAGATTCATCTCGCCATTGCGCCAGCGAGCAGCGTCGGCTTGcc > 3:427184/1‑148 (MQ=255) ttCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCGCCAGATTCATCTCGCCATTGCGCCAGCGAGCAGCGTCGGCTTGcc > 3:874853/1‑148 (MQ=255) taTGCGCGGCCT‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTg < 1:1011503/89‑1 (MQ=255) taTGCGCGGCCT‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTg > 2:1011503/2‑90 (MQ=255) taTGCGCGGCCT‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGtt < 2:288703/98‑1 (MQ=255) taTGCGCGGCCT‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGtt > 1:288703/2‑99 (MQ=255) taTGCGCGGCCT‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCGCCAGATTCATCTCGCCATTGCGCCAGCGAGCAGCGTCGGCTTg < 3:357121/143‑1 (MQ=255) tGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCg < 2:143233/99‑1 (MQ=255) tGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCg > 1:143233/1‑99 (MQ=255) gcAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCGCCAGATTCATCTCGCCATTGCGCCAGCGAGCAGCGTCGGCTTGCCAGTCAAt < 4:427184/148‑1 (MQ=255) | GCACGCGTACGCGTGGCACCCCGTTGAGAACGGCGTTAGTGTAGTGATTTTGTTATCAACCAGCAATCATGGATCCGGTGGCGCAAACCACGCTGATTTAAAATCGAACCAGCCGAGGGTATTCATGCGCAGGCC‑GCGCATACTGCGTTGCCCCTGAATGATCAGCCAGTGGTGCAATAATGGCACCATCGCTTTGCTGGCGACCAGTTGCTGGCACCAGTTCGCCAGATTCATCTCGCCATTGCGCCAGCGAGCAGCGTCGGCTTGCCAGTCAAT > NC_000913/75578‑75853 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |