Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 603,391 C→G 29.5% intergenic (+56/+25) pheP → / ← ybdG phenylalanine transporter/mechanosensitive channel protein, miniconductance

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913603,3910CG29.5% 74.0 / 40.4 44intergenic (+56/+25)pheP/ybdGphenylalanine transporter/mechanosensitive channel protein, miniconductance
Reads supporting (aligned to +/- strand):  ref base C (15/16);  new base G (5/8);  total (20/24)
Fisher's exact test for biased strand distribution p-value = 7.42e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01

ATGGATGATATGCGCTTGTCAGCGATCCTGCTGCCGGTGTGGATTGTATTCCTGTTTATGGCATTTAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCGATGAGAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAAT  >  NC_000913/603249‑603532
                                                                                                                                              |                                                                                                                                             
atggatgATATGCGCTTGTCAGCGATCCTGCTGCCGGTGTGGATTGTATTCCTGTTTATGGCATTTAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCg                                                                                                                                          >  4:900033/1‑148 (MQ=255)
atggatgATATGCGCTTGTCAGCGATCCTGCTGCCGGTGTGGATTGTATTCCTGTTTATGGCATTTAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCg                                                                                                                                          <  3:1137466/148‑1 (MQ=255)
atggatgATATGCGCTTGTCAGCGATCCTGCTGCCGGTGTGGATTGTATTCCTGTTTATGGCATTTAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCg                                                                                                                                          <  3:643027/148‑1 (MQ=255)
 tggatgATATGCGCTTGTCAGCGATCCTGCTGCCGGTGTGGATTGTATTCCTGTTTATGGCATTTAAGACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCGa                                                                                                                                         <  3:900033/148‑1 (MQ=255)
     tgatATGCGCTTGTCAGCGATCCTGCTGCCGGTGTGGATTGTATTCCTGTTTATGGCATTTAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCGAATGGATgag                                                                                                                                     <  3:246926/148‑1 (MQ=255)
     tgatATGCGCTTGTCAGCGATCCTGCTGCCGGTGTGGATTGTATTCCTGTTTATGGCATTTAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCGAATGGATgag                                                                                                                                     <  4:151776/148‑1 (MQ=255)
       atatGCGCTTGTCAGCGATCCTGCTGCCGGTGTGGATTGTATTCCTGTTTATGGCATTTAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCGAATGGATGagag                                                                                                                                   <  2:788926/148‑1 (MQ=255)
                   cAGCGATCCTGCTGCCGGTGTGGATTGTATTCCTGTTTATGGCATTTAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCAtt                                                                                                                                            >  4:688141/1‑127 (MQ=255)
                   cAGCGATCCTGCTGCCGGTGTGGATTGTATTCCTGTTTATGGCATTTAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCAtt                                                                                                                                            <  3:688141/127‑1 (MQ=255)
                      cGATCCTGCTGCCGGTGTGGATTGTATTCCTGTTTATGGCATTTAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCGAATGGATgag                                                                                                                                     >  1:328456/1‑131 (MQ=255)
                      cGATCCTGCTGCCGGTGTGGATTGTATTCCTGTTTATGGCATTTAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCGAATGGATgag                                                                                                                                     <  2:328456/131‑1 (MQ=255)
                        aTCCTGCTGCCGGTGTGGATTGTATTCCTGTTTATGGCATTTAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCGa                                                                                                                                         >  4:933559/1‑125 (MQ=255)
                        aTCCTGCTGCCGGTGTGGATTGTATTCCTGTTTATGGCATTTAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCGa                                                                                                                                         <  3:933559/125‑1 (MQ=255)
                                          aTTGTATTCCTGTTTATGGCATTTAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCGATg                                                                                                                                       <  3:615111/109‑1 (MQ=255)
                                          aTTGTATTCCTGTTTATGGCATTTAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCGATg                                                                                                                                       >  4:615111/1‑109 (MQ=255)
                                                             cATTTAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCGAATGGATGagag                                                                                                                                   <  1:982190/94‑1 (MQ=255)
                                                             cATTTAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCGAATGGATGagag                                                                                                                                   >  2:267094/1‑94 (MQ=39)
                                                             cATTTAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCGAATGGATGagag                                                                                                                                   <  1:267094/94‑1 (MQ=39)
                                                             cATTTAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCGAATGGATGagag                                                                                                                                   >  2:982190/1‑94 (MQ=39)
                                                             cATTTAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCg                                                                                                                                          >  1:849802/1‑87 (MQ=255)
                                                             cATTTAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCg                                                                                                                                          <  2:849802/87‑1 (MQ=255)
                                                                ttAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCGAATGGATGagag                                                                                                                                   <  3:941026/91‑1 (MQ=255)
                                                                ttAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCGAATGGATGagag                                                                                                                                   >  4:941026/1‑91 (MQ=255)
                                                                        cTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCGa                                                                                                                                         <  2:803897/77‑1 (MQ=255)
                                                                        cTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCGa                                                                                                                                         >  1:803897/1‑77 (MQ=255)
                                                                                gAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCg                                                                                                                                          <  2:454213/68‑1 (MQ=255)
                                                                                gAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCg                                                                                                                                          >  1:454213/1‑68 (MQ=255)
                                                                                      aGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCGATg                                                                                                                                       <  3:408318/65‑1 (MQ=255)
                                                                                      aGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCGATg                                                                                                                                       >  4:408318/1‑65 (MQ=255)
                                                                                       ggCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCGATg                                                                                                                                       >  3:565491/1‑64 (MQ=255)
                                                                                       ggCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCGATg                                                                                                                                       <  4:565491/64‑1 (MQ=255)
                                                                                           ttCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCg                                                                                                                                          >  4:847922/1‑57 (MQ=255)
                                                                                           ttCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCg                                                                                                                                          <  3:847922/57‑1 (MQ=255)
                                                                                                                                      ctctCATCCATTCGATGAGAGCGGTTTTTTTAATTACTGCTTaa                                                                                                            >  4:691746/1‑44 (MQ=255)
                                                                                                                                      ctctCATCCATTCGATGAGAGCGGTTTTTTTAATTACTGCTTaa                                                                                                            <  3:691746/44‑1 (MQ=255)
                                                                                                                                      ctctCATCCATTCGATGAGAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGa                      <  2:687867/130‑1 (MQ=255)
                                                                                                                                      ctctCATCCATTCGATGAGAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGa                      >  1:687867/1‑130 (MQ=255)
                                                                                                                                       tctcATCGAATGGATGAGAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCAt                                                                                 <  2:150844/70‑1 (MQ=37)
                                                                                                                                       tctcATCGAATGGATGAGAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCAt                                                                                 >  1:150844/1‑70 (MQ=37)
                                                                                                                                        ctcATCCATTCGATGAGAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGAAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAAt  >  1:800263/1‑148 (MQ=255)
                                                                                                                                          cATCCATTCGATGAGAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGa                                                                    >  1:446585/1‑80 (MQ=255)
                                                                                                                                          cATCCATTCGATGAGAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGa                                                                    <  2:446585/80‑1 (MQ=255)
                                                                                                                                            tCCATTCGATGAGAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAat                >  2:558228/1‑130 (MQ=255)
                                                                                                                                            tCCATTCGAAGAGAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCAGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAat                <  1:558228/130‑1 (MQ=255)
                                                                                                                                             ccATTCGATGAGAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTg                                                                               >  2:142962/1‑66 (MQ=255)
                                                                                                                                             ccATTCGATGAGAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTg                                                                               <  1:142962/66‑1 (MQ=255)
                                                                                                                                             ccATTCGATGAGAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGc                                                       <  2:150820/90‑1 (MQ=255)
                                                                                                                                             ccATTCGATGAGAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGc                                                       >  1:150820/1‑90 (MQ=255)
                                                                                                                                              |                                                                                                                                             
ATGGATGATATGCGCTTGTCAGCGATCCTGCTGCCGGTGTGGATTGTATTCCTGTTTATGGCATTTAAAACGCTGCGTCGGAAATAAGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCGATGAGAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAAT  >  NC_000913/603249‑603532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: