New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3620227 =	NA (NA)	3 (0.020)	3/290	NT	100%	coding (1036/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
	?	NC_000913	3620250 =	0 (0.000)					coding (1059/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

CCATTTCCGGCGGGACGGAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGT  >  NC_000913/3619979‑3620420                                                                                                                                                                                                                                                                                |                                                                                                                                                                           ccgtctgtgccctgagcctgccaacggcgtcaaactgactctgcgtgacgctgccgtccgcgtgttcctttttcaccacccgcttcagcccggcttcgccctgcgtgtgcagcacttcacggcggtccaggctgtcggtgatggtgatgcggtctttctcatactgatacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccacccgg                                                                                                                                                                         <  2:630340‑M2/4‑1 (MQ=255)                                                                                                                  acttcacggcggtccaggctgtcggtgatggtgatgcggtctttctcatactgatacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccggc                                                                                                                                                                        >  2:653959‑M2/159‑163 (MQ=255)                                                                                                                             gtccaggctgtcggtgatggtgatgcggtctttctcatactgatacgtgtagcttaggcctgccgggtttagctgttctgtcccccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatcc                                                                                                                                                                           <  8:313962‑M2/2‑1 (MQ=255)                                                                                                                             gtccaggctgtcggtgatggtgatgcggtctttctcatactgatacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccg                                                                                                                                                                          >  1:38537‑M2/148‑150 (MQ=255)                                                                                                                             gtccaggctgtcggtgatggtgatgcggtctttctcatactgatacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatc                                                                                                                                                                            <  6:407417‑M2/1‑1 (MQ=255)                                                                                                                              tccaggctgtcggtgatggtgatgcggtctttctcatactgatacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccg                                                                                                                                                                          >  4:793923‑M2/147‑149 (MQ=255)                                                                                                                              tccaggctgtcggtgatggtgatgcggtctttctcatactgatacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccg                                                                                                                                                                          >  7:70280‑M2/147‑149 (MQ=255)                                                                                                                              tccaggctgtcggtgatggtgatgcggtctttctcatactgatacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccg                                                                                                                                                                          >  2:610680‑M2/147‑149 (MQ=255)                                                                                                                              tccaggctgtcggtgatggtgatgcggtctgtctcatactgatacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccg                                                                                                                                                                          >  8:423547‑M2/147‑149 (MQ=255)                                                                                                                               ccaggctgtcggtgatggtgatgcggtctttctcatactgatacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccgg                                                                                                                                                                         >  8:561581‑M2/146‑149 (MQ=255)                                                                                                                               ccaggctgtcggtgatggtgatgcggtctttctcatactgatacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccgg                                                                                                                                                                         <  7:865151‑M2/4‑1 (MQ=255)                                                                                                                               ccaggctgtcggtgatggtgatgcggtctttctcatactgatacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccg                                                                                                                                                                          >  5:724614‑M2/146‑148 (MQ=255)                                                                                                                               ccaggctgtcggtgatggtgatgcggtctttctcatactgatacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccg                                                                                                                                                                          >  5:717792‑M2/146‑148 (MQ=255)                                                                                                                                caggctgtcggtgatggtgatgcggtctttctcatactgatacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccggc                                                                                                                                                                        <  8:319230‑M2/5‑1 (MQ=255)                                                                                                                                caggctgtcggcgatggtgatgcggtctttctcatactgatacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccggc                                                                                                                                                                        <  7:585810‑M2/5‑1 (MQ=255)                                                                                                                                 aggctgtcggtgatggtgatgcggtctttctcatactgatacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccggc                                                                                                                                                                        >  5:737936‑M2/144‑148 (MQ=255)                                                                                                                                 aggctgtcggtgatggtgatgcggtctttctcatactgatacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccggc                                                                                                                                                                        >  5:169316‑M2/144‑148 (MQ=255)                                                                                                                                  ggctgtcggtgatggtgatgcggtctttctcatactgatacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccggcc                                                                                                                                                                       >  5:910186‑M2/143‑148 (MQ=255)                                                                                                                                                          ctttctcatactgatacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatc                                                                                                                                                                            <  7:9167‑M2/1‑1 (MQ=255)                                                                                                                                                          ctttctcatactgatacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatc                                                                                                                                                                            >  8:9167‑M2/119‑119 (MQ=255)                                                                                                                                                                       atacgtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccg                                                                                                                                                                          >  1:118541‑M2/106‑108 (MQ=255)                                                                                                                                                                        cgcgGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGT  >  1:219083‑M2/1‑275 (MQ=255)                                                                                                                                                                        cgcgGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGT  >  2:266142‑M2/1‑275 (MQ=255)                                                                                                                                                                           gtgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatc                                                                                                                                                                            <  4:554354‑M2/1‑1 (MQ=255)                                                                                                                                                                            tgtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatc                                                                                                                                                                            >  2:814735‑M2/101‑101 (MQ=255)                                                                                                                                                                             gtagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccg                                                                                                                                                                          >  1:189268‑M2/100‑102 (MQ=255)                                                                                                                                                                              tagcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccg                                                                                                                                                                          >  2:461163‑M2/99‑101 (MQ=255)                                                                                                                                                                                gcttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccggc                                                                                                                                                                        <  4:814733‑M2/5‑1 (MQ=255)                                                                                                                                                                                 cttaagcctgccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccg                                                                                                                                                                          >  3:190527‑M2/96‑98 (MQ=255)                                                                                                                                                                                          gccgggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatc                                                                                                                                                                            >  4:270383‑M2/87‑87 (MQ=255)                                                                                                                                                                                              ggtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccggc                                                                                                                                                                        <  2:270384‑M2/5‑1 (MQ=255)                                                                                                                                                                                               gtttagctgttctgtcacccgcccgtcgctgtcgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatc                                                                                                                                                                            <  4:788942‑M2/1‑1 (MQ=255)                                                                                                                                                                                                                               cgtaacggtaacggatttccggccggcccgtgtgacggtgcgccaccatccg                                                                                                                                                                          >  1:79322‑M2/50‑52 (MQ=255)                                                                                                                                                                                                                                               ttccggccggcccgtgtgacggtgcgccaccatCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGAc                                                          >  6:828617‑M2/34‑148 (MQ=255)                                                                                                                                                                                                                                                  cggccggcccgtgtgacggtgcgccaccatCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTa                                                                                      <  8:102212‑M2/87‑1 (MQ=255)                                                                                                                                                                                                                                                  cggccggcccgtgtgacggtgcgccaccatCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTa                                                                                      >  7:102212‑M2/31‑117 (MQ=255)                                                                                                                                                                                                                                                                                CCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAgg                        <  7:344399‑M2/149‑1 (MQ=255)                                                                                                                                                                                                                                                                                CCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAgg                        >  7:30378‑M2/1‑149 (MQ=255)                                                                                                                                                                                                                                                                                CCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAgg                        <  8:417823‑M2/149‑1 (MQ=255)                                                                                                                                                                                                                                                                                CCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAgg                        <  8:491166‑M2/149‑1 (MQ=255)                                                                                                                                                                                                                                                                                CCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAg                         <  5:504006‑M2/148‑1 (MQ=255)                                                                                                                                                                                                                                                                                CCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAg                         <  5:774774‑M2/148‑1 (MQ=255)                                                                                                                                                                                                                                                                                |                                                                                                                                                                           CCATTTCCGGCGGGACGGAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCACCATCACCGACAGCCTGGACCGCCGTGAAGTGCTGCACACGCAGGGCGAAGCCGGGCTGAAGCGGGT  >  NC_000913/3619979‑3620420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.