Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 4,377,792 | A→T | 6.3% | intergenic (‑70/+19) | blc ← / ← ampC | outer membrane lipoprotein cell division and growth lipocalin/penicillin‑binding protein; beta‑lactamase, intrinsically weak |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,377,792 | 0 | A | T | 6.3% | 547.4 / 19.3 | 159 | intergenic (‑70/+19) | blc/ampC | outer membrane lipoprotein cell division and growth lipocalin/penicillin‑binding protein; beta‑lactamase, intrinsically weak |
Reads supporting (aligned to +/- strand): ref base A (65/83); new base T (4/6); total (70/89) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.58e-01 |
Only 100 of 159 total aligned reads displayed.
TGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGTACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCA > NC_000913/4377534‑4378036 | tGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGaa < 2:518171/275‑1 (MQ=255) tGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGCATTTTAATg > 2:705893/1‑275 (MQ=255) cTTTTTCCAGTCCACGTTAAAAGCGGGTGTCAAAACGGGCAATCCGATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTag < 4:595601/275‑1 (MQ=255) cTTGTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACGGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTag < 2:195163/275‑1 (MQ=255) accattCAAAGCGCGGATAAAAACGGGCAACTTCAACCCCGGAACCAAGATAACGTTTGGGGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGCGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAAt < 4:107205/271‑1 (MQ=255) gTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACGGTAGAGCGTTAAGAATCTGCCAGgcggcg > 2:539540/1‑275 (MQ=255) tACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGAACCCGAt > 1:168469/1‑206 (MQ=255) ccGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACAAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGa < 2:93184/203‑1 (MQ=255) gaTAACGTTTTGGGTCGAAATTATTTACCACGGTAACGCCACGGGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCGGTTGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGc < 4:78550/275‑1 (MQ=255) aTAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTGTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGcc < 2:139025/275‑1 (MQ=255) ggCGTCGAAATTATTTACTACGGTCACGCCACGCGGCTGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACg < 2:522770/275‑1 (MQ=255) gCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTCACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACg < 4:452898/274‑1 (MQ=255) cgcgGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAAt < 6:819571/148‑1 (MQ=255) agcggaggcgTAGTGGAACTGCATGCAACGACCAGAAATGCAGCGGTCGGTACGGGAACGAGAGGGGGCAGGCGCATAAATGTTTCCTTACTTGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGGTGGAATTTTACTGTAGGGCGTAAAGAATCTGCCAGGCGGCGTCGACTCTCGCCGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATGC‑CCAGCTCTTTTTCTGGAATAAACGCGa < 4:538325/274‑1 (MQ=255) gcggcggcgTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAAtt < 5:197800/148‑1 (MQ=255) gcggcggcgTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAAtt < 6:604764/148‑1 (MQ=255) gcggcggcgTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTc < 7:182188/149‑1 (MQ=255) cggcggcgTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTTTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCg < 8:64138/149‑1 (MQ=255) cggcggcgTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTc < 5:326594/148‑1 (MQ=255) aggcgTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTATGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAATTTTCGGa < 6:710989/147‑1 (MQ=255) ggcgTAGGAGAACTGCAGGCAACGACCAGAAATCCAGCTGTCGCTGCGGCAACGCGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTTAGTGTAGATGACAGCAAGGCAAAGCGGAGAAAACGTCCGAAACTTCGGACCCGATGGAATTTTACTGTAGAGCGTTACGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCCTCCTCCCG‑TACACTCTCTCTTTTTCTGGAATCAAcgcgcaatcg > 4:456941/1‑268 (MQ=255) gcgTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAATTTTCGGAcct < 7:238513/149‑2 (MQ=255) gcgTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAATTTTCGGAcct < 8:236694/149‑2 (MQ=255) cgTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAATTTTCGGAcct < 6:134353/148‑2 (MQ=255) gTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCg > 5:246962/1‑148 (MQ=255) gTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCg < 6:556312/148‑1 (MQ=255) tAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTtttgttt < 2:663517/222‑1 (MQ=255) gaACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGaa > 5:43083/1‑148 (MQ=255) aCTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAAGGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGAAAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAAtt < 6:705785/148‑1 (MQ=255) cTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAAtttt > 8:600583/1‑149 (MQ=255) tGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTa > 8:176482/1‑149 (MQ=255) gCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTa > 6:885979/1‑148 (MQ=255) cAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTAc < 5:792847/148‑1 (MQ=255) ggCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGaa > 2:676841/1‑243 (MQ=255) cAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGAt < 5:571956/134‑1 (MQ=255) cAACGAACAGAAATGCCGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTGTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGc < 2:60759/275‑1 (MQ=255) aaCGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTaga > 8:549109/1‑149 (MQ=255) aaCGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTaga > 7:322847/1‑149 (MQ=255) aaCGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGTTAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAGTCCGCCGGTCGc > 2:113413/1‑274 (MQ=255) cGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGccc < 2:75360/274‑1 (MQ=255) cGACCAGAAATGCAGCTGGCGCGGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGccc < 2:48096/274‑1 (MQ=255) gACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCg > 8:396183/1‑149 (MQ=255) ccAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGtt < 7:396183/149‑1 (MQ=255) aGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTa > 6:780522/1‑148 (MQ=255) tGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAAt < 5:756026/148‑1 (MQ=255) gCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCATGATAC‑CCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATg < 2:150840/273‑1 (MQ=255) aGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTg < 5:885979/148‑1 (MQ=255) gCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCTAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGTa > 2:228208/1‑272 (MQ=255) gCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGTAccc < 2:370640/275‑1 (MQ=255) tGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCa < 6:246962/148‑1 (MQ=255) gTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCTGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGATTTATGTACCCatg > 2:483918/1‑275 (MQ=255) cTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAggcgg > 5:275563/1‑148 (MQ=255) tGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAggcggc > 5:72499/1‑148 (MQ=255) aaCGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAATTTTCGGAcctt > 7:364616/1‑99 (MQ=255) aCGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGAct > 6:39098/1‑148 (MQ=255) gagaGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAATTTTCGGAcctt > 8:340638/1‑96 (MQ=255) gagaGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAATTTTCGGAcctt < 7:340638/98‑3 (MQ=255) agGGAGTAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCCCt < 7:600583/149‑1 (MQ=255) aGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTg < 5:126344/148‑1 (MQ=255) gcgcATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGa > 8:736014/1‑149 (MQ=255) gcATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGAt < 5:780522/148‑1 (MQ=255) tAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTa > 6:425152/1‑105 (MQ=255) tAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGc > 7:315342/1‑114 (MQ=255) tAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGc < 8:315342/114‑1 (MQ=255) aaaattgtCCTTACGGGGTTTTTTCTAAGGTGAGATGAAAGAAAGGAAAACCGGAGACAAGGTCGGAAAATTCGGGCCCGATGGAAGTTTACGGTAGAGTGTTAAGAATCTGCCAGTCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGTACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAAt < 4:539538/267‑1 (MQ=255) gTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTtttgt < 8:160921/149‑1 (MQ=255) ttCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTtttgttt < 8:391590/149‑1 (MQ=255) ttCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTtttgtt < 6:93847/148‑1 (MQ=255) ttACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGcc < 5:543168/148‑1 (MQ=255) aCTGGTTTTTTTCTAAGTGTAGATGACAGCAGGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATccgc > 1:191682/1‑204 (MQ=255) aCTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCCCGATAC‑CCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGTACCCATGATTCCGCTACTGCAGGAGTTGGGGGCGTATTCTGTTTTActgct > 4:213390/1‑271 (MQ=255) tttttCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACg < 6:72777/148‑1 (MQ=255) taagtttaaagtaCAGCAAGGAAAAGCGGAGAAAAGGGCCGAAAATTCGGCCCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCATGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGTACCCATGATGCGCGTACTGCTGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTg < 4:69043/263‑1 (MQ=255) tgtAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGActc < 7:255524/100‑1 (MQ=255) tgtAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGctc > 8:83463/1‑149 (MQ=255) tAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCtt > 8:580640/1‑149 (MQ=255) gACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTc < 6:752337/148‑1 (MQ=255) gACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTc < 5:695294/148‑1 (MQ=255) aCAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCt < 6:171805/148‑1 (MQ=255) aCAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGTACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCtttt > 2:637897/1‑244 (MQ=255) aCAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATCTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGTACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGATTTTCCGGGGCGTGCTGCCACTGCAATTTTATTGt > 4:411173/1‑275 (MQ=255) aGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACt > 2:125299/1‑54 (MQ=255) aGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGActc > 2:43738/1‑90 (MQ=255) aGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTNTTTTTCTGGAATAAACGCGACATAGCTACCCAATCCGCCgggc > 3:196660/1‑180 (MQ=255) aGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTgg > 6:550993/1‑148 (MQ=255) aGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGTACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCa < 2:342077/275‑1 (MQ=255) aGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTATAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTAGCTGGATTGGGATAGTTTTTGTTTGCCAGCTTCACGATAC‑CCAGCTCTTTTTATGGAATAAACGCGACTAAGCTACCAAATCCGCCGGTc > 4:429324/1‑182 (MQ=255) aGCAAAGAAAAGCGGAGAAAATGTCCGAAAAGTGCGACCCGATGGAATTTTACTGTAGAGGGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGTACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCa < 4:167735/275‑1 (MQ=255) cAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATaaa > 2:789790/1‑152 (MQ=255) aGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCa < 4:353824/122‑1 (MQ=255) aGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATAAAcgcg < 2:426445/154‑1 (MQ=255) gAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATAAAcgcg < 4:789788/152‑1 (MQ=255) gagaAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGccc < 2:779748/172‑1 (MQ=255) gaAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCtttt > 6:874103/1‑127 (MQ=255) gaAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCtttt < 5:874103/127‑1 (MQ=255) atcgggTCCGAATTTTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATAAACGCGACATAGc > 5:133070/5‑148 (MQ=255) aaaaGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGcc > 4:763270/1‑102 (MQ=255) aaaaGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATAAACGCGACATAGCt < 7:580640/149‑1 (MQ=255) aaaaGGACCGAAAATTCGGACCCGCTGGAATTCTACTGTAGAGTGTTAAGAATTTGCCAGGCGGCGCCGACTCTCGCTGGATTGGGATAGTTTTTGCTTGCCAGCATCACGACAC‑CCAGCTCTTTTTTTGGAATAAACGCGACATAGCAACCAAACCCGCCggac > 4:132339/1‑163 (MQ=255) ggTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATAAACGCGACATAGCTAcc > 5:160415/1‑148 (MQ=255) | TGTTGCGGTGACTTTTTCCAGTCCACGTTCAAAGCGGTGATCAAAACGGGCAATCTCATACCAGGTACCGAGATAACGTTTGGCGTCGAAATTATTTACTACGGTCACGCCACGCGGCGGCGTAGGAGAACTGCAGGCAACGACCAGAAATGCAGCTGTCGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGGTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGATAC‑CCAGCTCTTTTTCTGGAATAAACGCGACATAGCTACCAAATCCGCCGGTCGCCCCTGTTTTATGTACCCATGATGCGCGTACTGCAGGAGTTGGGGGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCA > NC_000913/4377534‑4378036 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |