New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2900530	46 (0.470)	6 (0.070)	6/236	NT	11.3%	intergenic (‑257/‑62)	ygcW/yqcE	putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein
	?	NC_000913	= 2900548	52 (0.570)					intergenic (‑275/‑44)	ygcW/yqcE	putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein

TCGTAATCACAGTGTGATATTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTATATTTAT  >  NC_000913/2900403‑2900687                                                                                                                                                  |                                                                                                                                            tCGTAATCACAGTGTGATATTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCtt                                                                                                                                           <  2:632239‑M2/148‑3 (MQ=255)  cGTAATCACAGTGTGATATTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCtta                                                                                                                                          >  1:229621‑M2/1‑145 (MQ=255)        cacaGTGTGATATTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCttacttttc                                                                                                                                    >  2:111390‑M2/1‑139 (MQ=255)                   atTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGt                                                                                                                        >  4:275460/1‑149 (MQ=255)                    ttCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGt                                                                                                                        <  1:632239/148‑1 (MQ=255)                      cGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACGTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCt                                                                                                                      >  1:268251/1‑148 (MQ=255)                         aTTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTAtt                                                                                                                   >  1:34577/1‑148 (MQ=255)                             tCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACaa                                                                                                               <  2:34577/148‑1 (MQ=255)                                aataatTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGt                                                                                                                        <  2:892427/136‑1 (MQ=255)                                aataatTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGt                                                                                                                        >  1:892427/1‑136 (MQ=255)                                aataatTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATgg                                                                                                           <  3:186706/149‑1 (MQ=255)                                     ttttAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAAt                                                                                                       <  2:633739/148‑1 (MQ=255)                                               cAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGatat                                                                                                <  2:621070/145‑1 (MQ=255)                                               cAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGatat                                                                                                >  1:621070/1‑145 (MQ=255)                                               cAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCa                                                                                             <  1:6220/148‑1 (MQ=255)                                                  aaGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAaca                                                                                          >  2:870620/1‑148 (MQ=255)                                                   aGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATg                                                                                                            >  1:814349/1‑129 (MQ=255)                                                   aGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATg                                                                                                            <  2:814349/129‑1 (MQ=255)                                                       tGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACGTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACt                                                                                     <  2:268251/148‑1 (MQ=255)                                                             ctctCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATc                                                                               >  2:588177/1‑148 (MQ=255)                                                               ctcACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAAt                                                                                                             >  4:96006/1‑116 (MQ=255)                                                               ctcACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAAt                                                                                                             <  3:96006/116‑1 (MQ=255)                                                                tcACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCg                                                                           >  3:81689/1‑149 (MQ=255)                                                                  acacaACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGtt                                                                         >  4:447326/1‑149 (MQ=255)                                                                   cacaACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAAc                                                                                      >  1:787441/1‑135 (MQ=255)                                                                   cacaACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAAc                                                                                      <  2:787441/135‑1 (MQ=255)                                                                    acaacaCCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTgg                                                                       >  3:839892/1‑149 (MQ=255)                                                                     caacaCCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGa                                                                      >  4:60117/1‑149 (MQ=255)                                                                          ccTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAAcc                                                                 <  4:67021/149‑1 (MQ=255)                                                                                     cATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAAt                                                      <  4:81689/149‑1 (MQ=255)                                                                                        gTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAg                                                   <  3:60117/149‑1 (MQ=255)                                                                                           atttattATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGttt                                                <  3:275460/149‑1 (MQ=255)                                                                                              tattatTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAg                                             >  4:722659/1‑149 (MQ=255)                                                                                               attattTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAgc                                            <  4:709049/149‑1 (MQ=255)                                                                                                   tttCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAAc                                                                  <  2:852320/123‑1 (MQ=255)                                                                                                   tttCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAAc                                                                  >  1:852320/1‑123 (MQ=255)                                                                                                       aaTTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGt                                    <  4:839892/149‑1 (MQ=255)                                                                                                        aTTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGtttt                                               <  2:495146/137‑1 (MQ=255)                                                                                                        aTTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGtttt                                               >  1:495146/1‑137 (MQ=255)                                                                                                             tAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGttt                              >  4:350644/1‑149 (MQ=255)                                                                                                                agaCCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCg                            <  2:184994/148‑1 (MQ=255)                                                                                                                    cTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTg                       >  3:783753/1‑149 (MQ=255)                                                                                                                     tGAGAAAAGTAATCCACCTGAAAGGGCGGCttacttttctcaggtctctagtaattgaaataataaataacatggaaagcagaggtgttgtgtgagagtaatcacgcttctgctttttaaaattatttgacaatacgaatatcacactg                      <  3:133800‑M2/149‑120 (MQ=255)                                                                                                                       agaAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCtttttt                                                                                                                            <  1:815466/45‑1 (MQ=255)                                                                                                                       agaAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCtttttt                                                                                                                            >  2:815466/1‑45 (MQ=255)                                                                                                                          aaaGTAATCCACCTGAAAGGGCGGCttacttttctcaggtctctagtaattgaaataataaataacatggaaagcagaggtgttgtgtgagagtaatctcgcttctgctttttaaaattatttgacaatacgaatatcacactgtgat                  >  2:772663‑M2/1‑25 (MQ=255)                                                                                                                          aaaGTAATCCACCTGAAAGGGCGGCttacttttctcaggtctctagtaattgaaataataaataacatggaaagcagaggtgttgtgtgagagtaatcacgcttctgctttttaaaattatttgacaatacgaatatcacactgtgat                  <  1:772663‑M2/148‑124 (MQ=255)                                                                                                                          aaaGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTa                  >  1:240808/1‑148 (MQ=255)                                                                                                                            aGTAATCCACCTGAAAGGGCGGCttacttttctcaggtctctagtaattgaaataataaataacatggaaagcagaggtgttgtgtgagagtaatcacgcttctgctttttaaaattatttgacaatacgaatatcacactgtgattac               <  3:551397‑M2/149‑127 (MQ=255)                                                                                                                               aaTCCACCTGAAAGGGCGGCttacttttctcaggtctctagtaattgaaataataaataacatggaaagcagaggtgttg                                                                                 <  1:522706‑M2/80‑61 (MQ=255)                                                                                                                               aaTCCACCTGAAAGGGCGGCttacttttctcaggtctctagtaattgaaataataaataacatggaaagcagaggtgttg                                                                                 >  2:522706‑M2/1‑20 (MQ=255)                                                                                                                                aTCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACg            <  1:870620/148‑1 (MQ=255)                                                                                                                                    aCCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTtatc       <  4:783753/149‑2 (MQ=255)                                                                                                                                    aCCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTtat        >  1:357657/1‑148 (MQ=255)                                                                                                                                    aCCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTtat        <  2:240808/148‑1 (MQ=255)                                                                                                                                     ccTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTatat      <  3:722659/149‑1 (MQ=255)                                                                                                                                       tGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACaaa                                                                                                              <  2:103059/43‑1 (MQ=255)                                                                                                                                       tGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACaaa                                                                                                              >  1:103059/1‑43 (MQ=255)                                                                                                                                        gAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACg            >  1:278348/1‑140 (MQ=255)                                                                                                                                        gAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACg            <  2:278348/140‑1 (MQ=255)                                                                                                                                          aaGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTATATTTAt  <  1:588177/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                            TCGTAATCACAGTGTGATATTCGTATTGTCAAATAATTTTAAAAAGCAGAAGCGTGATTACTCTCACACAACACCTCTGCTTTCCATGTTATTTATTATTTCAATTACTAGAGACCTGAGAAAAGTAATCCACCTGAAAGGGCGGCTTACTTTTCTCTTTTTTTTGTCTATTACAAATGGGAATACGATATGCAACACAACTCATATCGCCGTTGGATAACCCTCGCGATAATTAGTTTTAGCGGCGGCGTTAGTTTCGACCTGGCTTATTTACGTTATATTTAT  >  NC_000913/2900403‑2900687

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.