Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 120,154 | Δ1 bp | 5.8% | intergenic (+19/+24) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 120,154 | 0 | T | . | 5.8% | 796.6 / 37.3 | 225 | intergenic (+19/+24) | ampE/aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
Reads supporting (aligned to +/- strand): ref base T (107/104); new base . (8/5); total (115/110) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.71e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.86e-02 |
Only 100 of 228 total aligned reads displayed.
GGGTGTGGTATATGCCTTGATCGGTCATGGTGAGAAAGCGTTACCGGCCTGGTTTGCTTCGCTGGGTGATTTCCATACTTCGCAGTATCAGGTGTTAACGCGTCTGGCGCAGTTCTCTCTGGCGCGTGAACCGCATGTCGATAAGGTGGAGACGCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTACCGCCGCCATAAACAGCAGGCAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGCCTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATC > NC_000913/119892‑120424 | gATCGGTCATGGTGAGAAAGCGTTACCGGCCTGGTTTGCTTCGCTGGGTGATTTCCATACTTCGCAGTATCAGGTGTTAACGCGTCTGGCGCAGTTCTCTCTGGCGCGTGAACCGCATGTCGATAAGGTGGAGACGCCGAAGGCAGCGGTTTCAATTGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGAGTTGGTGTAAAGATTTTTGCCCTCA‑CCCTGTAC‑GGGGGAGGGCGTAGGGAGATTAATgg > 4:99521/1‑274 (MQ=255) cATGGTGAGAAAGCGTTACCGGCCTGGTTTGCTTCGCTGGGTGATTTCCATACTTCGCAGTATCAGGTGTTAACGCGTCTGGCGCAGTTCTCTCTGGCGCGTGCACCGCCTGTCGATAAGGTGGAGACGCCGAAGGCAGCGGTTTCAATGGCGAAGAACACCCCGTTCGTTGTCGTGGTGGTGTGTGCACTACTGACGCTTTCCGGGGCGTTGGTGTAAAGCTTATGTCCCTCA‑CCCTGTAC‑AGGTGTAGGCGTAGGTAGATACATGATCTTTTa > 4:1131/1‑275 (MQ=255) ggTGGGAAAGCGTTACCGGCCTGGTTTGCTTCGCTGGGTGATTTCCATACTTCGCAGTATCAGGTGTTAACGCGTCTGGCGCAGTTCTCTCTGGCGCGTGAACCGCATGTCGATAAGGTGGAGACGCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCt < 4:175000/235‑1 (MQ=255) tgattCGCTGGGTGATTTCCATACTTCGCAGTATCAGGTGTTAACGCGGCTGGGGCAGTGCTCTCTGGCGAGTGAACCGCATGTCGATAAGGTGGAGACGCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAg < 2:125213/271‑1 (MQ=255) cGCCGTATCAGGTGTTAACGCGTCTGGCGCAGTTCTCTCTCGCGCGTGAACCGCATGTCGATAAGGTGGAGACGCCGAACGCAGCGGTTTCAATGGCAAAGACAACCTCGTTCGTGGTCGTGGTGGTGATCGCACTACTGACGATTTACGGGGCGTTGGCGTAAAGATTATTGCCCTCA‑CCCTGTCC‑GGGTGAGGGCGTAGAGTGATTAATCCCATTATACGGCTTTGGCGGTTTTCGTCTTCAACCAG‑TCGGCGATACCCAaaacaaactac > 4:243244/1‑266 (MQ=255) cGCAGTATCAGGTGTTAACGCGTCTGGCGCAGTTCTCTCTGGCGCGTGAACCGCATGTCGATAAGGTGGAGACGCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCATCA‑CCCTGTAC‑GGGTGAGGGCGGAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTGTC‑TCTTTAAAACGATTGCCGATACCTAACACGAACAGCCa > 2:291454/1‑275 (MQ=255) aGTGTCCGGTGTTAACGCGTGTGGCGCAGTTCTCTCTGGCGCGGGAACCGCAGGTCGCTAAGGGGGAGACGCCGAAGGAAGCGAGTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATAc < 4:52011/275‑1 (MQ=255) tctctGGCGCGTGAACCGCATGTCGATAAGGTGGAGACGCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTg > 5:224857/1‑149 (MQ=255) tctGGCGCGTGAACCGCATGTCGATAAGGTGGAGACGCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTa > 5:417349/1‑149 (MQ=255) cgcgTGAACCGCATGTCGATAAGGTGGAGACGCCGACGGCAGCGGTTTCAATGGCGAAGCAAACCTCGTTAGTGGTCGTGGTGGTGATTGCACTACTGACGGTTTACGAGTCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑g > 1:53827/1‑146 (MQ=255) cgcgTGAACCGCATGTCGATAAGGTGGAGACGCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGt < 5:936194/149‑1 (MQ=255) cgTGAACCGCATGTCGATAAGGTGGAGACGCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGTTGTAAAGATTATTGCCCTCT‑CCCTGTAC‑GGGTGa < 8:446708/149‑1 (MQ=255) tGAACCGCATGTCGATAAGGTGGAGACGCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAgg < 7:1178641/149‑1 (MQ=255) tGAACCGCATGTCGATAAGGTGGAGACGCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCC‑GTACAGGGTGAgg < 7:1356843/149‑1 (MQ=255) ggAACCGNATGTCGATAAGGTGGAGACGCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTg < 3:53827/145‑1 (MQ=255) gAACCGCATGTCGATAAGGTGGAGACGCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAggg < 6:83185/149‑1 (MQ=255) ccGCATGTCGATAAGGTGGAGACGCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGAGt > 5:50895/1‑149 (MQ=255) gCATGTCGATAAGGTGGAGACGCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTag > 6:759622/1‑149 (MQ=255) gCATGTCGATAAGGTGGAGACGCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTag > 6:1104345/1‑149 (MQ=255) aGGTGGAGACGCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATg > 8:809063/1‑149 (MQ=255) aGGTGGAGAAGCCGAAGGCAGCGGTTTCAATGGCGAAGAAACCCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGGGTAAAGATTATTGCCCTCACCCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTAccg < 2:148635/275‑1 (MQ=255) ggTGGAGACGCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATgc < 5:787914/149‑1 (MQ=255) gTGGAGACGCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATgcg > 8:1167511/1‑149 (MQ=255) ggAGACGCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCt < 8:65572/149‑1 (MQ=255) agaCGCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCttt > 6:844755/1‑149 (MQ=255) gCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCtttt > 5:12065/1‑146 (MQ=255) gCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACg > 6:111715/1‑149 (MQ=255) gCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACg > 7:191072/1‑149 (MQ=255) ccGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACgg > 7:1275247/1‑149 (MQ=255) cGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGc < 8:191072/149‑1 (MQ=255) gAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCt > 5:830860/1‑149 (MQ=255) aGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATCAATGCGCTTTTACGGCttt < 8:362919/149‑1 (MQ=255) aGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCg > 5:1156021/1‑149 (MQ=255) aGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCg > 8:1029105/1‑149 (MQ=255) gCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATgcgc > 6:215162/1‑132 (MQ=255) tttCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGtttt > 5:841945/1‑149 (MQ=255) tttCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGtttt > 7:585148/1‑149 (MQ=255) ttCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTtc < 8:1443109/149‑1 (MQ=255) aaTGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTc‑tct < 6:420157/149‑1 (MQ=255) tGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCttt < 7:879906/149‑1 (MQ=255) gaagaaAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAAc < 7:673542/149‑1 (MQ=255) gaagaaAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGAGTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAAc > 6:94748/1‑149 (MQ=255) aagaaAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACa < 5:67267/149‑1 (MQ=255) aagaaAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACa > 8:638321/1‑149 (MQ=255) ccTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGcc > 8:1013624/1‑149 (MQ=255) cTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCg > 5:940412/1‑149 (MQ=255) tcgttcgtGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATg < 6:1341235/105‑1 (MQ=255) tcgttcgtGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATg > 5:1341235/1‑105 (MQ=255) ggtcgtggtGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAac > 8:471039/1‑149 (MQ=255) gtggtggtgATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGa < 6:1450836/149‑1 (MQ=255) tggtgATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAg > 6:406869/1‑149 (MQ=255) aTTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATa > 6:1400130/1‑149 (MQ=255) gCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCG‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCg < 6:224857/149‑1 (MQ=255) actactGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCggg > 5:63488/1‑149 (MQ=255) tactGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGAt > 8:1079146/1‑149 (MQ=255) tactGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGAt < 5:429805/149‑1 (MQ=255) ctGACGATTTACGGGGGGTTTGTGTAAAGATTATTGCCCTCG‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGTCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAAAACGATCAGCCATACCGGGATCa < 8:608823/149‑1 (MQ=255) ctGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGCTAGCCGATACCTAACACGATCAGCCATACCGGGAACACGTATACCGAAATCGCCATTCCTGGGTTCATCAGCATAATACCCAGTACCGGCTCCATAACCATCAGGAAGATCCAGTTACCCCGGGGATAAACCACAGCAGGGCACCTAGTCACCACGCCtgtt > 4:125240/1‑271 (MQ=255) ctGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCa < 8:509880/149‑1 (MQ=255) ctGACGATGTACGGGGAGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGAGTAATGCGCTTTTACGGCTTTGGCGGTTTGC‑GCTTTAAACAGATTGCCGATACCTAACCCGATCAGCCATACCGGGATCa < 6:50895/149‑1 (MQ=255) tGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAg > 8:339751/1‑149 (MQ=255) tGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAg > 5:522471/1‑149 (MQ=255) tGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAg < 7:1013624/149‑1 (MQ=255) aCGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCCGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTGGGGTCATCCGCATAATCCCCAGTACCGCCCCCATAAACCAACGGCAGATCCCGTTACCCAGCGGGCAAAGCCAAGACGGACAGCGGGTTACCACGCCTTGTTccc > 4:302388/1‑274 (MQ=255) cGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGta < 5:1400130/149‑1 (MQ=255) gATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGtat > 8:855504/1‑149 (MQ=255) gATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGtat < 6:645223/149‑1 (MQ=255) gTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGcc < 6:997047/149‑1 (MQ=255) gTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAAATAGCCGATACCTAACACGATCAGCCATACCGGGATc > 6:1250161/1‑131 (MQ=255) ttGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCa > 6:288454/1‑149 (MQ=255) tGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCAt < 5:107325/149‑1 (MQ=255) gtAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCt > 5:987215/1‑149 (MQ=255) tAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGCTACCTAAAACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTg > 7:80226/1‑149 (MQ=255) tAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTg < 7:930415/149‑1 (MQ=255) nanaGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTg > 6:180867/2‑149 (MQ=255) aaaGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTtc‑t < 7:36027/76‑1 (MQ=255) aaaGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTgg < 8:890229/149‑1 (MQ=255) aaGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTggg < 7:855504/149‑1 (MQ=255) aaGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTACCGCCGCCATAAACAGCAGGCAGATCCAGTTACCCAGCGGATAAAGAAGAGCAGGGAAGCGAGTTACCACGCCATGTTCCTCCTTGGCCCCACGGAATTTCata > 2:232855/1‑275 (MQ=255) aGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTgggg > 5:247010/1‑149 (MQ=255) gATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTGGGGt > 5:769880/1‑149 (MQ=255) tcttGCCCTCA‑CCCCGTAC‑GGGTTAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGTGATCAGGTATACCGAAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTACCGCCGCCATAAACAGCAGGCAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGCCTTGTTCCTGCTTGGCGCGACGGAATTTCATATgcgc < 2:343034/273‑1 (MQ=255) tacgCCCTCA‑CCC‑GTACAGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGa < 8:759390/96‑1 (MQ=38) attGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATAcc > 4:376774/1‑110 (MQ=255) gCCCTCA‑CCC‑GTACAGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTGGGGTCATCAGc > 5:185021/1‑149 (MQ=255) cccTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGa < 2:376775/110‑1 (MQ=255) cccTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTACCGCCGCCATAAACAGCAGGCAGATCCAGTTACCCAGCGGATAAagcagagc < 4:164119/213‑1 (MQ=255) ccTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTGGGGTCATCAGCAt > 7:644673/1‑149 (MQ=255) ccTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTGGGGTCATCAGCAt > 6:1368856/1‑149 (MQ=255) ccTCA‑CCC‑GTACAGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTGGGGTCATCAGCAt > 5:219813/1‑149 (MQ=255) cTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTaaa < 7:299264/70‑1 (MQ=255) cTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTaaa > 8:299264/1‑70 (MQ=255) cTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTGGGGtcatca > 5:1459483/1‑144 (MQ=255) cTCA‑CCC‑GTACAGGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTGGGGTCATCAGCATa > 8:531837/1‑149 (MQ=255) tCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTtc > 5:322210/1‑61 (MQ=255) a‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTGGGGTCATCAGCATAATc > 7:452954/1‑149 (MQ=255) a‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTACCGCCGCCATAAACAGCAGGAAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGCCTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAAGCTAatc > 2:13884/1‑275 (MQ=255) cccTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTGGGGTCATCAGCATAATCa < 5:1161203/149‑1 (MQ=255) cccTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTGGGGTCATCAGCATAATCa > 7:290254/1‑149 (MQ=255) ccTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTGGGGTCATCAGCATAATCAc < 8:1276837/149‑1 (MQ=255) | GGGTGTGGTATATGCCTTGATCGGTCATGGTGAGAAAGCGTTACCGGCCTGGTTTGCTTCGCTGGGTGATTTCCATACTTCGCAGTATCAGGTGTTAACGCGTCTGGCGCAGTTCTCTCTGGCGCGTGAACCGCATGTCGATAAGGTGGAGACGCCGAAGGCAGCGGTTTCAATGGCGAAGAAAACCTCGTTCGTGGTCGTGGTGGTGATTGCACTACTGACGATTTACGGGGCGTTGGTGTAAAGATTATTGCCCTCA‑CCCTGTAC‑GGGTGAGGGCGTAGAGAGATTAATGCGCTTTTACGGCTTTGGCGGTTTTC‑TCTTTAAACAGATAGCCGATACCTAACACGATCAGCCATACCGGGATCAGGTATACCGAAATCGCCATTCCTGGGGTCATCAGCATAATCACCAGTACCGCCGCCATAAACAGCAGGCAGATCCAGTTACCCAGCGGATAAAGCAGAGCAGGGAAGCGAGTTACCACGCCTTGTTCCTGCTTGGCGCGACGGAATTTCATATGCGCCAGGCTAATC > NC_000913/119892‑120424 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |