New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4066065175 (0.870)4 (0.020) 4/276 NT 2.2% coding (1130/1386 nt) yihP putative 2,3‑dihydroxypropane‑1‑sulphonate exporter, membrane protein
?NC_000913 = 4066091 180 (0.930)coding (1104/1386 nt) yihP putative 2,3‑dihydroxypropane‑1‑sulphonate exporter, membrane protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 221 total aligned reads displayed.

CGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTGTAGAAGCAACCCATCGCCACAATGGTGACTACCGCCAGTGCGCTTGGGTAGATGAAGATCAACTGGCGTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGCCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGC  >  NC_000913/4065794‑4066317
                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                            
cgtcgtTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTGTAGAAGCAACCCATCGCCACAATGGTGACTACCGCCAGTGCGCTTGGGTAGATGACGATCAACTGGCGTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTTCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAACCCGgtg                                                                                                                                                                                                                                                            >  2:284153/1‑274 (MQ=255)
                          gTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTGTAGAAGCAACCCATCGCCACAATGGTGACTACCGCCAGTGCGCTTGGGTAGATGAAGATCAACTGGCGTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGccg                                                                                                                                                                                                                                 >  2:113015‑M2/1‑272 (MQ=255)
                                                                                              aTCGCCACAATGGTGACTACCGCCAGTGCGCTTGGGTAGATGAAGATCAACTGGCGTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGgt                                                                                                                                                                                                                                                             <  2:19455/179‑1 (MQ=255)
                                                                                                             aCTACCGCCAGTGCGCTTGGGTAGATGAAGATCAACTGGCGTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGAACGCCGGTGCGCCACTCGCCGTACTCGCCGGTGTCGGAAACAAGCGCCAAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGACCGc                                                                                                                                                 >  1:17866/1‑272 (MQ=255)
                                                                                                                           gcTTGGGTAGATGAAGATCAACTGGCGTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGG                                                                                                                                                                                                                                                              >  8:304050‑M1/1‑149 (MQ=255)
                                                                                                                            cTTGGGTAGATGAAGCTAAACGGGCGTAAACCTTAAATGGGGGGGTCAGCCTGGGGGACGTGCGGAACATAGGCAATTTGAGTCAGGATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAACGCCa                                                                                                                                <  4:284153/274‑1 (MQ=255)
                                                                                                                             ttGGGTAGATGAAGATCAACTGGCGTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGgtg                                                                                                                                                                                                                                                            >  5:154970/1‑149 (MQ=255)
                                                                                                                             ttGGGTAGATGAAGATCAACTGGCGTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGgtg                                                                                                                                                                                                                                                            >  5:332133/1‑149 (MQ=255)
                                                                                                                                     aTGAAGATCAACTGGCGTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGt                                                                                                                                                                                                                                                    >  7:796516/1‑149 (MQ=255)
                                                                                                                                     aTGAAGATCAACTGGCGTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGt                                                                                                                                                                                                                                                    >  7:576368/1‑149 (MQ=255)
                                                                                                                                       gAAGATCAACTGGCGTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGttc                                                                                                                                                                                                                                                  <  5:981882/149‑1 (MQ=255)
                                                                                                                                         aGATCAACTGGCGTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGttcct                                                                                                                                                                                                                                                >  6:1046114/1‑149 (MQ=255)
                                                                                                                                           aTCAACTGGCGTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGttccttc                                                                                                                                                                                                                                              <  5:581772/149‑1 (MQ=255)
                                                                                                                                           aTCAACTGGCGTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGttccttc                                                                                                                                                                                                                                              <  7:1029947/149‑1 (MQ=255)
                                                                                                                                              aaCTGGCGTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGa                                                                                                                                                                                                                                           >  8:1009668/1‑149 (MQ=255)
                                                                                                                                               aCTGGCGTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGaa                                                                                                                                                                                                                                          >  7:976735/1‑149 (MQ=255)
                                                                                                                                               aCTGGCGTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGaa                                                                                                                                                                                                                                          <  6:214065/149‑1 (MQ=255)
                                                                                                                                               aCTGGCGTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCGGTACTCGACGGTGTCGGACACCCGCGCCCAGTTCAGGCTGTTCACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAACGCCACGAAGCTGACCGAAccgccg                                                                                                            >  2:145929/1‑275 (MQ=255)
                                                                                                                                               aCTGGCGTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACgg                                                                                                                                                                                                        <  4:302832/183‑1 (MQ=255)
                                                                                                                                                cTGGCGTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGG                                                                                                                                                                                                                                                              <  5:64575‑M1/128‑1 (MQ=255)
                                                                                                                                                 tGGCGTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAacg                                                                                                                                                                                                                                        >  7:1356743/1‑149 (MQ=255)
                                                                                                                                                     gTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAacgcacg                                                                                                                                                                                                                                    >  6:130426/1‑149 (MQ=255)
                                                                                                                                                       aaCCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGcc                                                                                                                                                                                                                                  >  7:1251322‑M2/1‑147 (MQ=255)
                                                                                                                                                         cccTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGccgg                                                                                                                                                                                                                                <  7:19834‑M2/149‑5 (MQ=255)
                                                                                                                                                          ccTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGcgtgcgttcggaaggaacggtctacaccggt                                                                                                                                                                                                                               <  6:178490‑M1/149‑32 (MQ=255)
                                                                                                                                                          ccTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAg                                                                                                                                                                                                                                                         <  6:684794/123‑1 (MQ=255)
                                                                                                                                                          ccTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAg                                                                                                                                                                                                                                                         >  5:684794/1‑123 (MQ=255)
                                                                                                                                                          ccTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGccggt                                                                                                                                                                                                                               <  5:1448142‑M2/149‑6 (MQ=255)
                                                                                                                                                          ccTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGccggt                                                                                                                                                                                                                               <  5:347411‑M2/149‑6 (MQ=255)
                                                                                                                                                          ccTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGccggt                                                                                                                                                                                                                               <  5:686914‑M2/149‑6 (MQ=255)
                                                                                                                                                            ttCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTgc                                                                                                                                                                                                                             <  7:627750/149‑1 (MQ=255)
                                                                                                                                                            ttCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTgc                                                                                                                                                                                                                             <  8:1248288/149‑1 (MQ=255)
                                                                                                                                                            ttCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTgc                                                                                                                                                                                                                             >  8:1303998/1‑149 (MQ=255)
                                                                                                                                                            ttCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTgc                                                                                                                                                                                                                             >  7:1367208/1‑149 (MQ=255)
                                                                                                                                                             tCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACACACTCTGCGCCAAAGAACCCCAGGCAGGAGAACGCCAACAAACTGACCGAACCGCCGCCGAACAACAAGtt                                                                                              >  4:167496/1‑275 (MQ=255)
                                                                                                                                                             tCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCTGAGAAATAGtt                                                                                              >  2:118487/1‑275 (MQ=255)
                                                                                                                                                                   gtgtGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTc                                                                                                                                                                                                                      >  7:378144/1‑149 (MQ=255)
                                                                                                                                                                    tgtgGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCCAACAAATAGTTGAGCaaa                                                                                       >  2:33940/1‑273 (MQ=255)
                                                                                                                                                                      tgGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGcc                                                                                                                                                                                                                   <  6:332133/149‑1 (MQ=255)
                                                                                                                                                                      tgGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAACGCCACGAAGCGGACCGAACCGCCCCCGAAGAAagaggtaaaccaaac                                                                                     >  4:128000/1‑264 (MQ=255)
                                                                                                                                                                       ggTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCg                                                                                                                                                                                                                  >  6:786507/1‑149 (MQ=255)
                                                                                                                                                                        gTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGt                                                                                                                                                                                                                 >  5:393870/1‑149 (MQ=255)
                                                                                                                                                                        gTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCg                                                                                                                                                                                                            >  4:365573/1‑154 (MQ=255)
                                                                                                                                                                             cgtgtgCGCCGTTCGGCACATAGCCAATTTGCGTCAGCATACAGCCGGGGAAGAAACCCGCAAGCGCCTGAGACACTTTACGAAAGAAGGTAAAACCGGTGTAGACCTTTCCTTCCTAACGCACGCCGGTGCGCCACTCGCCGTACTCg                                                                                                                                                                                                            >  6:1105684/3‑149 (MQ=255)
                                                                                                                                                                             ccTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCg                                                                                                                                                                                                            >  7:565245/1‑149 (MQ=255)
                                                                                                                                                                                    gACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGgtgt                                                                                                                                                                                                     >  7:262333/1‑149 (MQ=255)
                                                                                                                                                                                     aCGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGgt                                                                                                                                                                                                                                                             <  7:529450/92‑1 (MQ=255)
                                                                                                                                                                                     aCGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGgt                                                                                                                                                                                                                                                             >  8:529450/1‑92 (MQ=255)
                                                                                                                                                                                     aCGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTc                                                                                                                                                                                                    <  8:648271/149‑1 (MQ=255)
                                                                                                                                                                                       gTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCgg                                                                                                                                                                                                  >  5:796384/1‑149 (MQ=255)
                                                                                                                                                                                       gTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTAAGCAGATCGCCCAGCACCCAAATca                                                                    >  2:201656/1‑275 (MQ=255)
                                                                                                                                                                                          cGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGgt                                                                                                                                                                                                                                                             <  8:1269845/87‑1 (MQ=255)
                                                                                                                                                                                          cGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGgt                                                                                                                                                                                                                                                             >  7:1269845/1‑87 (MQ=255)
                                                                                                                                                                                          cGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGaaa                                                                                                                                                                                               <  8:721376/149‑1 (MQ=255)
                                                                                                                                                                                             cacaTAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCa                                                                                                                                                                                            <  7:471298/149‑1 (MQ=255)
                                                                                                                                                                                             cacaTAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCa                                                                                                                                                                                            <  7:1394805/149‑1 (MQ=255)
                                                                                                                                                                                               caTAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAgc                                                                                                                                                                                          <  5:1168894/149‑1 (MQ=255)
                                                                                                                                                                                                  aGCNNTTTGGCGTCATAATCCAGCCGGGGAAGAAACCCGCCAGCGCGTGAGACNCTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGGGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAACGCCACg                                                                                                                              <  4:351791/206‑1 (MQ=255)
                                                                                                                                                                                                   gCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGttcctt                                                                                                                                                                                                                                               >  6:961740/1‑92 (MQ=255)
                                                                                                                                                                                                   gCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGccc                                                                                                                                                                                      >  8:1049175/1‑149 (MQ=255)
                                                                                                                                                                                                   gCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGccc                                                                                                                                                                                      >  6:1382351/1‑149 (MQ=255)
                                                                                                                                                                                                     cAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAANCAGCGCCCAGTTCAGGCGGTTAACAAACGATGAGCCAAAGAACGCCAGGCCGGAGAAAGCCACGAAACTGACCGAAACGCNGACGAAGAAATAGTTAAGAAAACCGNCCAGCACCCAAAAAAACACGCCCCCGaaa                                                      >  3:61567/1‑273 (MQ=255)
                                                                                                                                                                                                            cGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGc                                                                                                                                                                             <  5:10392/149‑1 (MQ=255)
                                                                                                                                                                                                              tCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTg                                                                                                                                                                           >  8:1427647/1‑149 (MQ=255)
                                                                                                                                                                                                               cAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGt                                                                                                                                                                          <  6:481112/149‑1 (MQ=255)
                                                                                                                                                                                                                 gCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTa                                                                                                                                                                        >  5:1260156/1‑149 (MQ=255)
                                                                                                                                                                                                                      cAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACaaa                                                                                                                                                                   >  8:244650/1‑149 (MQ=255)
                                                                                                                                                                                                                       aGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAAc                                                                                                                                                                  <  6:832774/149‑1 (MQ=255)
                                                                                                                                                                                                                        gCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACg                                                                                                                                                                 >  5:1217859/1‑149 (MQ=255)
                                                                                                                                                                                                                         ccGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCCGCACCCAAATCAGCAGGCCGCCGATATAAACTTTCTTCTTGCCaa                                   >  2:254926/1‑274 (MQ=255)
                                                                                                                                                                                                                            gggAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGa                                                                                                                                                             <  8:796516/149‑1 (MQ=255)
                                                                                                                                                                                                                               aagaaACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGcc                                                                                                                                                          >  8:93321/1‑149 (MQ=255)
                                                                                                                                                                                                                                agaaACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCa                                                                                                                                                         >  8:1318300/1‑149 (MQ=255)
                                                                                                                                                                                                                                  aaaCCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAg                                                                                                                                                                               >  5:948995/1‑125 (MQ=255)
                                                                                                                                                                                                                                  aaaCCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCaaa                                                                                                                                                       <  8:557992/149‑1 (MQ=255)
                                                                                                                                                                                                                                        gccagcGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGc                                                                                                                                                 <  8:1356743/149‑1 (MQ=255)
                                                                                                                                                                                                                                             gggtgagggacagttGGGAAAGGAGGGAAAACCGGGGGAGACCGTTCTAGCCGGACGCGCGCGGGGGCGCGACGCGCGGGACTGGAGGATGGTGGGAACCAGCGCCCAGTTCAGGCTGTAAACAGACGCTGAGCCGAAGAACGACAGGCAGGAGAACGCAACGAAGCTGACCGAACCGCCGCCGAAGAACTAGTTGAGCAGATCGCCCAGAACCCAAATCAGCAGGCCGCCGATATAAACTTTGGTCTTGCCAAAACGTCTGACTGaggcaggc               <  4:145929/261‑1 (MQ=255)
                                                                                                                                                                                                                                                 tGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGga                                                                                                                                        <  7:226172/149‑1 (MQ=255)
                                                                                                                                                                                                                                                 tGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGCCGATATAAACTTTCTTCTTGCCaaa                                  <  2:104922/251‑1 (MQ=255)
                                                                                                                                                                                                                                                    gaCACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGaa                                                                                                                                     >  6:1185577/1‑149 (MQ=255)
                                                                                                                                                                                                                                                     acacTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAAc                                                                                                                                    <  8:1087875/149‑1 (MQ=255)
                                                                                                                                                                                                                                                     acacTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAAc                                                                                                                                    <  8:147007/149‑1 (MQ=255)
                                                                                                                                                                                                                                                       acTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAACGc                                                                                                                                  >  5:850089/1‑149 (MQ=255)
                                                                                                                                                                                                                                                        cgttGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGCCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACg   <  2:55793/273‑1 (MQ=255)
                                                                                                                                                                                                                                                              gAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAACGCCACGAAg                                                                                                                           >  8:1397940/1‑149 (MQ=255)
                                                                                                                                                                                                                                                                 agaagGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAACGCCACGAAGCTg                                                                                                                        >  5:1291015/1‑149 (MQ=255)
                                                                                                                                                                                                                                                                  gaagGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGccc                                                                                                                                                                                      <  6:313640/86‑1 (MQ=255)
                                                                                                                                                                                                                                                                  gaagGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGccc                                                                                                                                                                                      >  5:313640/1‑86 (MQ=255)
                                                                                                                                                                                                                                                                     ggTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGccggttttaccttctttcgcaaagtgtctcaggcgctggctggtttcttccccggctggatgctgacgcaaattggctatgtgccgaacgtcgcacaggctgaccacaccat                                                                                                                    <  6:1296559‑M2/149‑113 (MQ=255)
                                                                                                                                                                                                                                                                       tAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAACGCCACGAAGCTGACCGaa                                                                                                                  <  7:1303809/149‑1 (MQ=255)
                                                                                                                                                                                                                                                                       tAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAACGCCACGAAGCTGACCGaa                                                                                                                  >  6:1237615/1‑149 (MQ=255)
                                                                                                                                                                                                                                                                        aaaaCCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAACGcc                                                                                                                                 >  5:919156/1‑133 (MQ=255)
                                                                                                                                                                                                                                                                        aaaaCCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAACGcc                                                                                                                                 <  6:919156/133‑1 (MQ=255)
                                                                                                                                                                                                                                                                        aaaaCCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAACGCCACGAAGCTGACCGAAc                                                                                                                 <  8:962662/149‑1 (MQ=255)
                                                                                                                                                                                                                                                                          aaCCGGTGTAGACCGTTCCTTCCGAACGCACGccggttttaccttctttcgcaaagtgtctcaggcgctggctg                                                                                                                                                                                          <  8:1276474‑M2/74‑43 (MQ=255)
                                                                                                                                                                                                                                                                          aaCCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAACGCCACGAAGCTGACCGAAccg                                                                                                               >  7:1244201/1‑149 (MQ=255)
                                                                                                                                                                                                                                                                           aCCGGcgtgcgttcggaaggaacggtctacaccggttttaccttctttcgcaaagtgtctcaggcgctggctggtttcttccccggctggatgctgacgcaaattggctatgt                                                                                                                                                  >  7:1323044‑M1/1‑5 (MQ=255)
                                                                                                                                                                                                                                                                           aCCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAACGCCACGAAGCTGACCGAAccgc                                                                                                              >  6:339151/1‑149 (MQ=255)
                                                                                                                                                                                                                                                                            ccGGcgtgcgttcggaaggaacggtctacaccggttttaccttctttcgcaaagtgtctcaggcgctggctggtttcttccccggctggatgctgacgcaaattggctatgtgccgaacgtcgcacaggctgaccacaccattgaaggg                                                                                                             <  7:1211722‑M1/149‑146 (MQ=255)
                                                                                                                                                                                                                                                                              ggcgtgcgttcggaaggaacggtctacaccggttttaccttctttcgcaaagtgtctcaggcgctggctggtttcttccccggctggatgctgacgcaaattggctatgtgccgaacgtcgcacaggctgaccacaccattgaagggtt                                                                                                           >  8:576368‑M1/1‑2 (MQ=255)
                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                            
CGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTGTAGAAGCAACCCATCGCCACAATGGTGACTACCGCCAGTGCGCTTGGGTAGATGAAGATCAACTGGCGTAACCCTTCAATGGTGTGGTCAGCCTGTGCGACGTTCGGCACATAGCCAATTTGCGTCAGCATCCAGCCGGGGAAGAAACCAGCCAGCGCCTGAGACACTTTGCGAAAGAAGGTAAAACCGGTGTAGACCGTTCCTTCCGAACGCACGCCGGTGCGCCACTCGCCGTACTCGACGGTGTCGGAAACCAGCGCCCAGTTCAGGCTGTTAACAAACGCTGAGCCAAAGAACGCCAGGCAGGAGAACGCCACGAAGCTGACCGAACCGCCGCCGAAGAAATAGTTGAGCAGATCGCCCAGCACCCAAATCAGCAGGCCGCCGATATAAACTTTCTTCTTGCCAAAACGTCTGACTGAGGCAGGCATCAGGAATACGC  >  NC_000913/4065794‑4066317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.