New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4024564199 (0.990)4 (0.020) 4/272 NT 2.0% coding (258/489 nt) rfaH transcription antitermination protein
?NC_000913 = 4024614 200 (1.050)coding (208/489 nt) rfaH transcription antitermination protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 249 total aligned reads displayed.

GTGCTTAATCTCTTTATTAATAAGATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCTTTCGAGGTGTTCCTGGGCACGTTGAAGTTGCCCGCGCTTGCAGTACAGTAAATACCAGGATTGCATAATGACTCTTATCCGTTTAATCGGGGCGCAAGGATAGCAAAAGCT  >  NC_000913/4024366‑4024866
                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                            
gtgCTTAATCTCTTTATTAATAAGATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGCTAGCTGATGAATAACCGCCGATGGGACTATCGCCGGCGACGCGCCAAAGCGCACGACAGGGCTGAACCCGCCGGTCGCGT‑TGTAAGACGTGGTATGAATCACTTcgg                                                                                                                                                                                                                                    >  4:34831/1‑273 (MQ=255)
                                         agcgagcCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACACGCCAAAGCGCACGAAGGGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGTTCAAATTCCACAAACAGGGAGTTGGGGGACAAGGGCTCa                                                                                                                                                                                           >  1:10241/1‑275 (MQ=255)
                                                                  gAAAAGGGCCTGAAAGCTTTTGAACGCGCCTTCGGTAATATTCACCTTATAACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCcacgca                                                                                                                                                                  <  4:307592/275‑1 (MQ=255)
                                                                              aaaGCCTTCGAACGCGCTGTCGGTAATAATGACCTTATCACCCGGATAAGGGGTTGCGGGATCGACAATGTCTGTCGGTTTATATACCGATAGCGGATGAATGACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTcc                                                                                                                                                       <  2:304554/274‑1 (MQ=255)
                                                                                                      aataatCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑Tga                                                                                                                                                                                                                                                            >  6:666139‑M2/1‑147 (MQ=255)
                                                                                                      aataatCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑Tga                                                                                                                                                                                                                                                            >  5:324871‑M2/1‑147 (MQ=255)
                                                                                                       ataatCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGG‑Tgat                                                                                                                                                                                                                                                           <  7:1449757‑M2/149‑4 (MQ=255)
                                                                                                          atCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑Tgatagt                                                                                                                                                                                                                                                        <  8:21903‑M2/149‑7 (MQ=255)
                                                                                                           tCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑Tgatagtc                                                                                                                                                                                                                                                       >  7:1118696‑M2/1‑142 (MQ=255)
                                                                                                            cACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCg                                                                                                                                                                                                                                                      >  7:381286/1‑149 (MQ=255)
                                                                                                             aCCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGt                                                                                                                                                                                                                                                     <  8:352106/149‑1 (MQ=255)
                                                                                                             aCCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATg                                                                                                                                                                                                                                               >  2:4370/1‑155 (MQ=255)
                                                                                                                ttATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGt                                                                                                                                                                                                                                                  >  8:746061/1‑149 (MQ=255)
                                                                                                                ttATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGt                                                                                                                                                                                                                                                  <  7:690373/149‑1 (MQ=255)
                                                                                                                ttATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGt                                                                                                                                                                                                                                                  >  5:1163847/1‑149 (MQ=255)
                                                                                                                 tATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTa                                                                                                                                                                                                                                                 <  8:1355918/149‑1 (MQ=255)
                                                                                                                 tATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATc                                                                                                                                                                                                                                           <  4:4370/155‑1 (MQ=255)
                                                                                                                  aTCACCCGGATAAGGGGTTGTCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTAt                                                                                                                                                                                                                                                <  5:112907/149‑1 (MQ=255)
                                                                                                                  aTCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTAt                                                                                                                                                                                                                                                <  7:1419914/149‑1 (MQ=255)
                                                                                                                     aCCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGaa                                                                                                                                                                                                                                             >  6:920852/1‑149 (MQ=255)
                                                                                                                      cccGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAAt                                                                                                                                                                                                                                            <  8:102873/149‑1 (MQ=255)
                                                                                                                          gATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCg                                                                                                                                                                                                                                                      >  8:259832/1‑135 (MQ=255)
                                                                                                                              aGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTg                                                                                                                                                                                                                                    >  6:1322234/1‑149 (MQ=255)
                                                                                                                                 ggTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGt                                                                                                                                                                                                                                 >  8:41538/1‑149 (MQ=255)
                                                                                                                                     gCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCaaa                                                                                                                                                                                                                             <  6:1126621/149‑1 (MQ=255)
                                                                                                                                        ggATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTc                                                                                                                                                                                                                          >  7:1305031/1‑149 (MQ=255)
                                                                                                                                          aTCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCca                                                                                                                                                                                                                        >  7:196632/1‑149 (MQ=255)
                                                                                                                                               cAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAAc                                                                                                                                                                                                                   <  7:1049932/149‑1 (MQ=255)
                                                                                                                                                aaTGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACa                                                                                                                                                                                                                  <  5:1322234/149‑1 (MQ=255)
                                                                                                                                                aaTGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACa                                                                                                                                                                                                                  >  8:383562/1‑149 (MQ=255)
                                                                                                                                                  tGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAgg                                                                                                                                                                                                                <  7:16176/149‑1 (MQ=255)
                                                                                                                                                  tGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAgg                                                                                                                                                                                                                <  5:194958/149‑1 (MQ=255)
                                                                                                                                                  tGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAgg                                                                                                                                                                                                                <  6:192238/149‑1 (MQ=255)
                                                                                                                                                    tCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTa                                                                                                                                                                                                              <  6:111844/149‑1 (MQ=255)
                                                                                                                                                     cTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAg                                                                                                                                                                                                             <  5:678514/149‑1 (MQ=255)
                                                                                                                                                        tCGGTTTATATACCGATAGCTGATGAATAACCGTCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTg                                                                                                                                                                                                          <  8:466598/149‑1 (MQ=255)
                                                                                                                                                         cGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTgg                                                                                                                                                                                                         <  7:1376364/149‑1 (MQ=255)
                                                                                                                                                           gTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTgggg                                                                                                                                                                                                       >  7:1288348/1‑149 (MQ=255)
                                                                                                                                                           gTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTgggg                                                                                                                                                                                                       >  8:753711/1‑149 (MQ=255)
                                                                                                                                                                   aCCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATgg                                                                                                                                                                                               <  7:41538/149‑1 (MQ=255)
                                                                                                                                                                    ccGATAGCTGATGAATAACCGCCGATGGGACTATCGATGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGc                                                                                                                                                                                              >  8:1381522/1‑149 (MQ=255)
                                                                                                                                                                     cGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCt                                                                                                                                                                                             >  6:963042/1‑149 (MQ=255)
                                                                                                                                                                      gATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTg                                                                                                                                                                                                                                                    <  7:956007/93‑1 (MQ=255)
                                                                                                                                                                      gATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGACTCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGTCTCACTGACTGCAGTAAGTTTTCCCCGACCGATTTTTTCCAGGGTGATCATCGGTGACCGGCAATTCACAGCCTGTCTTTCGAGGTGTTCCTGGGCCCGTTCAAGGTGCCCGCGCTTGCAGTACAGTaa                                                              >  4:99208/1‑275 (MQ=255)
                                                                                                                                                                          gCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCactg                                                                                                                                                                                        >  7:736717/1‑149 (MQ=255)
                                                                                                                                                                           cTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTTTCTTTCGAGGCGTTCCTGGGCACGTTGAAGTTGCCCGCGCTTGctg                                                                      >  2:136266/1‑260 (MQ=255)
                                                                                                                                                                           cTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCTTTCGAGGTGTTCCTGGGCACGTTGAAGTTGCCcggcgt                                                                           >  4:204289/1‑253 (MQ=255)
                                                                                                                                                                            tgatgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAAt                                                                                                                                                                                                 <  8:236885/138‑1 (MQ=255)
                                                                                                                                                                            tgatgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAAt                                                                                                                                                                                                 >  7:236885/1‑138 (MQ=255)
                                                                                                                                                                            tgatgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCactgac                                                                                                                                                                                      <  8:582920/149‑1 (MQ=255)
                                                                                                                                                                            tgatgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCactgac                                                                                                                                                                                      >  7:608747/1‑149 (MQ=255)
                                                                                                                                                                            tgatgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCactgac                                                                                                                                                                                      <  6:76052/149‑1 (MQ=255)
                                                                                                                                                                             gatgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGc                                                                                                                                                                                              <  8:1245290/140‑1 (MQ=255)
                                                                                                                                                                              atgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TTATAGTCGTGGTCTGAATCACTTCTGGCTCAAATTCCACAAACAGGAAGTTGGGGAACAATGACTCactgactg                                                                                                                                                                                    >  5:506288/1‑149 (MQ=255)
                                                                                                                                                                              atgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTg                                                                                                                                                                                                                                    >  8:1188686/1‑101 (MQ=255)
                                                                                                                                                                              atgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTg                                                                                                                                                                                                                                    <  7:1188686/101‑1 (MQ=255)
                                                                                                                                                                              atgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCTTTCGAGGTGTTCCTGGGCACGTTGAAGTTGCCCGCGCTTg                                                                         <  2:333808/256‑1 (MQ=255)
                                                                                                                                                                                gaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCa                                                                                                                                                                                  >  6:6242/1‑149 (MQ=255)
                                                                                                                                                                                   tAACCGCCGATGGGACTATCGCTGGCTACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTa                                                                                                                                                                               <  6:399196/149‑1 (MQ=255)
                                                                                                                                                                                   tAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTa                                                                                                                                                                               >  5:869561/1‑149 (MQ=255)
                                                                                                                                                                                   tAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTa                                                                                                                                                                               >  8:1195263/1‑149 (MQ=255)
                                                                                                                                                                                   tAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTa                                                                                                                                                                               >  5:790013/1‑149 (MQ=255)
                                                                                                                                                                                    aaCCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAgg                                                                                                                                                                                                                >  8:875031/1‑115 (MQ=255)
                                                                                                                                                                                     aCCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCTTTCGAGGTGTTCCTggg                                                                                                >  2:117304/1‑226 (MQ=255)
                                                                                                                                                                                        gccgATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGttt                                                                                                                                                                          >  7:666280/1‑149 (MQ=255)
                                                                                                                                                                                         ccgATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCTTTCGAGGTGTTCCTGGGCACg                                                                                            <  4:117304/226‑1 (MQ=255)
                                                                                                                                                                                          cgATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTc                                                                                                                                                                        <  6:315426/149‑1 (MQ=255)
                                                                                                                                                                                          cgATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTc                                                                                                                                                                        <  7:527384/149‑1 (MQ=255)
                                                                                                                                                                                                gACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑Tgatagtcccatcggcggttattcatcagctatcggtatataaaccgaaaga                                                                                                                                                                                                           <  6:256685‑M2/108‑52 (MQ=255)
                                                                                                                                                                                                gACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑Tgatagtcccatcggcggttattcatcagctatcggtatataaaccgaaaga                                                                                                                                                                                                           >  5:256685‑M2/1‑57 (MQ=255)
                                                                                                                                                                                                  cTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCcacgcacg                                                                                                                                                                >  6:1159524/1‑149 (MQ=255)
                                                                                                                                                                                                   tATCGCTGGCGACACGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGa                                                                                                                                                               >  8:478827/1‑149 (MQ=255)
                                                                                                                                                                                                          ggCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTc                                                                                                                                                        <  7:829665/149‑1 (MQ=255)
                                                                                                                                                                                                          ggCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCTTTCGAGGTGTTCCTGGGCACGTTGAAGTTGCCCGCGCTTGCAGTACAGTAAATACCAGGATTGCATAATGACTCTTATCCGTTTAAt                          >  2:56431/1‑275 (MQ=255)
                                                                                                                                                                                                           gCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAg                                                                                                                                                                                                                 <  5:479379/91‑1 (MQ=255)
                                                                                                                                                                                                           gCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTcc                                                                                                                                                       <  6:511273/149‑1 (MQ=255)
                                                                                                                                                                                                             gACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCCAGCgatagtcccatcggcggttattcatcagctatcggtatataaaccgaaagacattgtcgatccggcaaccccttatccgggtgataaggtgattattaccgaag                                                                                                                                                      <  5:932202‑M2/149‑105 (MQ=255)
                                                                                                                                                                                                              aCGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAgg                                                                                                                                                    <  8:817595/149‑1 (MQ=255)
                                                                                                                                                                                                                  gcCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGa                                                                                                                                                <  7:753711/149‑1 (MQ=255)
                                                                                                                                                                                                                  gcCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGa                                                                                                                                                <  7:1432717/149‑1 (MQ=255)
                                                                                                                                                                                                                   ccAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGat                                                                                                                                               >  6:1466097/1‑149 (MQ=255)
                                                                                                                                                                                                                    cAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGatc                                                                                                                                              <  7:335849/149‑1 (MQ=255)
                                                                                                                                                                                                                     aaaGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGatca                                                                                                                                             >  6:841156/1‑149 (MQ=255)
                                                                                                                                                                                                                        gcgcACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCg                                                                                                                                          <  6:1267861/149‑1 (MQ=255)
                                                                                                                                                                                                                          gcACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGt                                                                                                                                        <  7:1203460/149‑1 (MQ=255)
                                                                                                                                                                                                                              gAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAg                                                                                                                                                     <  6:1035343/132‑1 (MQ=255)
                                                                                                                                                                                                                              gAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAg                                                                                                                                                     >  5:1035343/1‑132 (MQ=255)
                                                                                                                                                                                                                               aaGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAg                                                                                                                                   <  5:412173/149‑1 (MQ=255)
                                                                                                                                                                                                                                  ggggtGAAACCGGGGGGTGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCTTTCGAGGTGTTCCTGGGCACGTTGAAGTTGCCCGCGCTTGCAGTACAGTAAATACCAGGATTGCATAATGACTCTTATCCGTTTAATCGGGGCGCAAGGATAGCAAAAGCt  <  4:56431/271‑1 (MQ=255)
                                                                                                                                                                                                                                    gCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAg                                                                                                                                   >  5:1368612/1‑144 (MQ=255)
                                                                                                                                                                                                                                      tGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTc                                                                                                                            >  6:27888/1‑149 (MQ=255)
                                                                                                                                                                                                                                         cacCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTcaca                                                                                                                         <  6:1115388/149‑1 (MQ=255)
                                                                                                                                                                                                                                         cacCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTcaca                                                                                                                         <  7:1221318/149‑1 (MQ=255)
                                                                                                                                                                                                                                           ccGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCaa                                                                                                                               <  7:258769/141‑1 (MQ=255)
                                                                                                                                                                                                                                           ccGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGc                                                                                                                       <  8:154728/149‑1 (MQ=255)
                                                                                                                                                                                                                                            cgcgGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGcc                                                                                                                      <  7:306562/149‑1 (MQ=255)
                                                                                                                                                                                                                                                ggTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTc                                                                                                                  <  6:491833/149‑1 (MQ=255)
                                                                                                                                                                                                                                                  tCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCtt                                                                                                                >  8:61029/1‑149 (MQ=255)
                                                                                                                                                                                                                                                       t‑tGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCTTTCGAg                                                                                                           <  5:97942/149‑1 (MQ=255)
                                                                                                                                                                                                                                                       t‑tGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCTTTCGAg                                                                                                           >  7:763377/1‑149 (MQ=255)
                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                            
GTGCTTAATCTCTTTATTAATAAGATTAAGCAATAGCATGGAGCGAGCCTCACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCTTTCGAGGTGTTCCTGGGCACGTTGAAGTTGCCCGCGCTTGCAGTACAGTAAATACCAGGATTGCATAATGACTCTTATCCGTTTAATCGGGGCGCAAGGATAGCAAAAGCT  >  NC_000913/4024366‑4024866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.