New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	448501 =	172 (1.060)	10 (0.070)	6/246	NT	6.1%	coding (160/615 nt)	cyoC	cytochrome o ubiquinol oxidase subunit III
	?	NC_000913	448521 =	147 (0.970)					coding (140/615 nt)	cyoC	cytochrome o ubiquinol oxidase subunit III

AACTGATACTTTGACGCACGCGACTGCCCACGCGCACGAACACGGGCACCACGATGCAGGCGGAACCAAAATCTTCGGATTTTGGATCTACCTGATGAGCGACTGCATTCTGTTCTCTATCTTGTTTGCTACCTATGCCGTTCTGGTGAACGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/448655‑448501 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaacggcaTAGGTAGCAAACAAGATAGAGAACAGAATGCAGTCGCTCATCAGGTAGATCCAAAATCCGAAGATTTTGGTTCCGCCTGCATCGTGGTGCCCGTGTTCGTGCGCGTGGGCAGTCGCGTGCGTCAAAGTATCAGTTGCCATTTTTCAGC  >  NC_000913/448521‑448668                                                                                                                                                                                                                                                                                                                 AACTGATACTTTGACGCACGCGACTGCCCACGCGCACGAACACGGGCACCTCGATGCAGGCGGAACCAAAATCTTCGGATTTTGGATCTACCTGATGAGCGACTGCATTCTGTTCTCTATCTTGTTTGCTACCTATGCCGTTCTGGTGA                                                                                                                                                            >  2:596752/1‑149  ACTGATACTTTGACGCACGCGACTGCCCACGCGCACGAACACGGGCACCACGATGCAGGCGGAACCAAAATCTTCGGATTTTGGATCTACCTGATGAGCGACTGCATTCTGTTCTCTATCTTGTTTGCTACCTATGCCGTTCTGGTGAA                                                                                                                                                           <  4:1324370/149‑1  ACTGATACTTTGACGCACGCGACTGCCCACGCGCACGAACACGGGCACCACGATGCAGGCGGAACCAAAATCTTCGGATTTTGGATCTACCTGATGAGCGACTGCATTCTGTTCTCTATCTTGTTTGCTACCTATGCCGTTCTGGTGAA                                                                                                                                                           <  2:313173/149‑1  ACTGATAATTTGACTCACGCGACTACCCACGCGCACGAACACGGGCACCACGAGGCAGGCGGAACCAAAAACATCGTGTTTGGGATCTACCTGATGAGCGACTGCATTCTGTTCTCTATCTTGTTTTCTACCTATGCGGATCTGTTGAA                                                                                                                                                           >  4:401872/1‑149   CTGATACTTTGACGCACGCGACTGCCCACGCGCACGAACACGGGCACCACGATGCAGGCGGAACCAAAATCTTCGGATTTTGGATCTACCTGATGAGCGACTGCATTCTGTTCTCTATCTTGTTTGCTACCTATGCCGTTCTGGTGAAC                                                                                                                                                          <  1:1416835/149‑1   CTGATACTTTGACGCACGCGACTGCCCACGCGCACGAACACGGGCACCACGATGCAGGCGGAACCAAAATCTTCGGATTTTGGATCTACCTGATGAGCGACTGCATTCTGTTCTCTATCTTGTTTGCTACCTATGCCGTTCTGGTGAAC                                                                                                                                                          <  1:932920/149‑1   CTGATACTTTGACGCACGCGACTGCCCACGCGCACGAACACGGGCACCACGATGCAGGCGGAACCAAAATCTTCGGATTTTGGATCTACCTGATGAGCGACTGCATTCTGTTCTCTATCTTGTTTGCTACCTATGCCGTTCTGGCGAAC                                                                                                                                                          <  1:1352983/149‑1    TGATACTTTGACGCACGCGACTGCCCACGCGCACGAACACGGGCACCACGATGCAGGCGGAACCAAAATCTTCGGATTTTGGATCTACCTGATGAGCGACTGCATTCTGTTCTCTATCTTGTTTGCTACCTATGCCGTTCTGGTGAACG                                                                                                                                                         >  3:866729/1‑149    TGATACTTTGACGCACGCGACTACCCACGCGCACGAACACGGGCACCACGATGCAGGCGGAACCAAAATCTTCGGATTTTGGATCTACCTGATGAGCGACTGCATTCTGTTCTCTATCTTGTTTGCTACCTATGCCGTTCTGGTGAACG                                                                                                                                                         >  1:899059/1‑149     GATACTTTGACGCACGCGACTGCCCACGCGCACGAACACGGGCACCACGATGCAGGCGGAACCAAAATCTTCGGATTTTGGATCTACCTGATGAGCGACTGCATTCTGTTCTCTATCTTGTTTGCTACCTATGCCGTTCTGGTGAACGG                                                                                                                                                        <  2:1138429/149‑1             GACGCACGCGACTGCCCACGCGCACGAACACGGGCACCACGATGCAGGCGGAACCAAAATCTTCGGATTTTGGATCTACCTGATGAGCGACTGCATTCTGTTCTCTATCTTGTTTGCTACCTATGCCGTTCACCAGAACGGCATAGGTA                                                                                                                                                <  1:775621/149‑1                                                                                                        TGCATTCTGTTCTCTATCTTGTTTGCTACCTATGCCGTTCACCAGAACGGCATAGGTA                                                                                                                                                >  4:990204/1‑58                                                                                                        TGCATTCTGTTCTCTATCTTGTTTGCTACCTATGCCGTTCACCAGAACGGCATAGGTA                                                                                                                                                <  3:990204/58‑1                                                                                                                                     CTATGCCGTTCTGGTGAACGGCATAGGTAGCAAACAAGATAGAGAACAGAATGCAGTCGCTCATCAGGTAGATCCAAAATCCGAAGATTTTGGTTCCGCCTGCATCGTGGTGCCCGTGTTCGTGCGCGTGGGCAGTCGCGTGCGTCAAA                        >  4:1255425/1‑149                                                                                                                                      TATGCCGTTCTGGTGAACGGCATAGGTAGCAAACAAGCTAGAGAACAGAATGCAGTCGCTCATCAGGTAGATCCAAAATCCGAAGATTTTGGTTCCGCCTGCATCGTGGTGCCCGTGTTCGTGCGCGTGGGCAGTCGCGTGCGTCAAAG                       >  4:1277908/1‑149                                                                                                                                      TATGCCGTTCTGGTGAACGGCATAGGTAGCAAACAAGATAGAGAACAGAATGCAGTCGCTCATCAGGTAGATCCAAAATCCGAAGATTTTGGTTCCGCCTGCATCGTGGTGCCCGTGTTCGTGCGCGTGGGCAGTCGCGTGCGTCAAAG                       >  3:477698/1‑149                                                                                                                                      TATGCCGTTCTGGTGAACGGCATAGGTAGCAAACAAGATAGAGAACAGAATGCAGTCGCTCATCAGGTA                                                                                                       >  2:182403/1‑69                                                                                                                                      TATGCCGTTCTGGTGAACGGCATAGGTAGCAAACAAGATAGAGAACAGAATGCAGTCGCTCATCAGGTA                                                                                                       <  1:182403/69‑1                                                                                                                                       ATGCCGTTCTGGTGAACGGCATAGGTAGCAAACAAGATAGAGAACAGAATGCAGTCGCTCATCAGGTAGATCCAAAATCCGAAGATTTTGGTTCCGCCTGCATCGTGGTGCCCGTGTTCGTGCGCGTGGGCAGTCGCGTGCGTCAAAGT                      >  1:549583/1‑149                                                                                                                                       ATGCCGTTCTGGTGAACGGCATAGGTAGCAAACAAGATAGAGAACAGAATGCAGTCGCTCATCAGGTAGATCCAAAATCCGAAGATTTTGGTTCCGCCTGCATCGTGGTGCCCGTGTTCGTGCGCGTGGGCAGTCGCGTGCGTCAAAGT                      >  2:300359/1‑149                                                                                                                                                     AACGGCATAGGTAGCAAACAAGATAGAGAACAGAATGCAGTCGCTCATCAGGTAGATCCAAAATCCGAAGATTTTGGTTCCGCCTGCATCGTGGTGCCCGTGTTCGTGCGCGTGGGCAGTCGCGTGCGTCAAAGTATCAGTTGCCATTT        <  3:1360346/149‑1                                                                                                                                                        GGCATAGGTAGCAAACAAGATAGAGAACAGAATGCAGTCGCTCATCAGGTAGATCCAAAATCCGAAGATTTTGGTTCCGCCTGCATCGTGGTGCCCGTGTTCGTGCGCGTGGGCAGTCGCGTGCGTCAAAGTATCAGTTGCCATTTTTC     >  4:337123/1‑149                                                                                                                                                         GCATAGGTAGCAAACAAGATAGAGAACAGAATGCAGTCGCTCATCAGGTAGATCCAAAATCCGAAGATTTTGGTTCCGCCTGCATCGTGGTGCCCGTGTTCGTGCGCGTGGGCAGTCGCGTGCGTCAAAGTATCAGTTGCCATTTTTCA    <  1:569314/149‑1                                                                                                                                                         GCATAGGTAGCAAACAAGATAGAGAACAGAATGCAGTCGCTCATCAGGTAGATCCAAAATCCGAAGATTTTGGTTCCGCCTGCATCGTGGTGCCCGTGTTCGTGCGCGTGGGCAGTCGCGTGCGTCAAAGTATCAGTTGCCATTTTTCA    <  2:893975/149‑1                                                                                                                                                         GCATAGGTAGCAAACAAGATAGAGAACAGAATGCAGTCGCTCATCAGGTAGATCCAAAATCCGAAGATTTTGGTTCCGCCTGCATCGTGGTGCCCGTGTTCGTGCGCGTGGGCAGTCGCGTGCGTCAAAGTATCAGTTGCCATTTTTCA    <  3:202807/149‑1                                                                                                                                                           ATAGGTAGCAAACAAGATAGAGAACAGAATGCAGTCGCTCATCAGGTATATCCAAAATCCGAAGATTTTGGTTCCGCCTGCATCGTGGTGCCCGTGTTCGTGCGCGTGGGCAGTCGCGAGCGTCAAAGTATCAGTTGCCATTTTTCAGC  >  1:958962/1‑149                                                                                                                                                           ATAGGTAGCAAACAAGATAGAGAACAGAATGCAGTCGCTCATCAGGTAGATCCAAAATCCGAAGATTTTGGTTCCGCCTGCATCGTGGTGCCCGTGTTCGTGCGCGTGGGCAGTCGCGTGCGTCAAAGTATCAGTTGCCATTTTTCAGC  >  1:1189588/1‑149                                                                                                                                                                                                                                                                                                                 AACTGATACTTTGACGCACGCGACTGCCCACGCGCACGAACACGGGCACCACGATGCAGGCGGAACCAAAATCTTCGGATTTTGGATCTACCTGATGAGCGACTGCATTCTGTTCTCTATCTTGTTTGCTACCTATGCCGTTCTGGTGAACGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/448655‑448501 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaacggcaTAGGTAGCAAACAAGATAGAGAACAGAATGCAGTCGCTCATCAGGTAGATCCAAAATCCGAAGATTTTGGTTCCGCCTGCATCGTGGTGCCCGTGTTCGTGCGCGTGGGCAGTCGCGTGCGTCAAAGTATCAGTTGCCATTTTTCAGC  >  NC_000913/448521‑448668

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.