| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1512410 = | 164 (1.010) | 8 (0.050) | 7/254 | NT | 5.1% | coding (757/1146 nt) | ydcS | putative ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1512451 = | 138 (0.880) | coding (798/1146 nt) | ydcS | putative ABC transporter periplasmic binding protein | |||||
TCCATTTGTAGGCGCAAACCGGATGTTTCGCTTCGCTATGCAGCATGGTGGTATCAGCCCAACCGGTAACACCCTCCTTCGGGAAAACGGTAGCAACAGGCTGGCCTTCGGCTTTCAGGGCGTTGGCCTGATAGGGCCAGGCACTGGAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1512560‑1512410‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcCGAAGGCCAGCCTGTTGCTACCGTTTTCCCGAAGGAGGGTGTTACCGGTTGGGCTGATACCACCATGCTGCATAGCGAAGCGAAACATCCGGTTTGCGCCTACAAATGGATGAACTGGTCATTAACGCCAAAAGTGCAGGGCGATGTG > NC_000913/1512451‑1512598 TCCATTTGTAGGCGCAAACCGGATGTTTCGTTTCGCTATGCAGCATGGTGGTATCAGCCCAACCGGTAACACCCTCCTTCGGGAAAACGGTAGCAACAGGCTGGCCTTCGGCTTTCAGGGCGTTGGCCTGATAGGGCCAGGCACTGGAA > 4:705325/1‑149TCCATTTGTAGGCGCAAACCGGATGTTTCGCTTCGCTATGCAGCATGGTGGTATCAGCCCAACCGGTAACACCCTCCTTCGGGAAAACGGTAGCAACAGGCTGGCCTTCGGCTTTCAGGGCGTTGGCCTGATAGGGCCAGGCACTGGAA > 3:17242/1‑149TCCATTTGTAGGCGCAAACCGGATGTTTCGCTTCGCTATGCAGCATGGTGGTATCAGCCCAACCGGTAACACCCTCCTTCGGGAAAACGGTAGCAACAGGCTGGCCTTCGGCTTTCAGGGCGTTGGCCTGATAGGGCCAGGCACTGGAA > 1:358211/1‑149TCCATTTGTAGGCGCAAACCGGATGTTTCGCTTCGCTATGCAGCATGGTGGTATCAGCCCAACCGGTAACACCCTCCTTCGGGAAAACGGTAGCAACAGGCTGGCCTTCGGCTTTCAGGGCGTTGGCCTGATAGGGCCAGGCACTGGAA > 3:760597/1‑149TCCATTTGTAGGCGCAAACCGGATGTTTCGCTTCGCTATGCAGCATGGTGGTATCAGCCCAACCGGTAACACCCTCCTTCGGGAAAACGGTAGCAACAGGCTGGCCTTCGGCTTTCAGGGCGTTGGCCTGATAGGGCCAGGCACTGGAA < 1:582672/149‑1TCCATTTGTAGGCGCAAACCGGATGTTTCGCTTCGCTATGCAGCATGGTGGTATCAGCCCAACCGGTAACACCCTCCTTCGGGAAAACGGTAGCAACAGGCTGGCCTTCGGCTTTCAGGGCGTTGGCCTGATAGGGCCAGGCACTGGAA < 4:1241974/149‑1TCCATTTGTAGGCGCAAACCGGATGTTTCGCTTCGCTATGCAGCATGGTGGTATCAGCCCAACCGGTAACACCCTCCTTCGGGAAAACGGTAGCAACAGGCTGGCCTTCGGCTTTCAGGGCGTTGGCCTGATAGGGCCAGGCACTGGAA < 2:1458912/149‑1 CCATTTGTAGGCGCAAACCGGATGTTTCGCTTCGCTATGCAGCATGGTGGTATCAGCCCAACCGGTAACACCCTCCTTCGGGAAAACGGTAGCAACAGGCTGGCCTTCGGCTTTCAGGGCGTTGGCCTGATAGGGCCAGGCACTGGAAG > 1:667506/1‑149 CATTTGTAGGCGCAAACCGGATGTTTCGCTTCGCTATGCAGCATGGTGGTATCAGCCCAACCGGTAACACCCTCCTTCGGGAAAACGGTAGCAACAGGCTGGCCTTCGGCTTTCAGGGCGTTGGCCTGATAGGGCCAGGCACTGGAAG > 2:1004856/1‑148 CATTTGTAGGCGCAAACCGGATGTTTCGCTTCGCTATGCAGCATGGTGGTATCAGCCCAACCGGTAACACCCTCCTTCGGGAAAACGGTAGCAACAGGCTGGCCTTCGGCTTTCAGGGCGTTGGCCTGATAGGGCCAGGCACTGGAAG < 1:1004856/148‑1 CTGGCCTTCGGCTTTCAGGGCGTTGGCCTGATAGGGCCAGGCACTGGAA < 1:1137406/49‑1 CTGGCCTTCGGCTTTCAGGGCGTTGGCCTGATAGGGCCAGGCACTGGAA > 2:1137406/1‑49 CTTTCAGGGCGTTGGCCTGATAGGGCCAGGCACTGGAAGCCGAAGGCCAGCCTGTTGCTACCGTTTTCCCGAAGGAGGGTGTTACCGGTTGGGCTGATACCACCATGCTGCATAGCGAAGCGAAACATCCGG > 3:1002517/1‑132 CTTTCAGGGCGTTGGCCTGATAGGGCCAGGCACCGGAAGCCGAAGGCCAGCCTGTTGCTACCGTTTTCCCGAAGGAGGGTGTTACCGGTTGGGCTGATACCACCATGCTGCATAGCGAAGCGAAACATCCGG < 4:1002517/132‑1 TTTCAGGGCGTTGGCCTGATAGGGCCAGGCACTGGAAGCCGAAGGCCAGCCTGTTGCTACCGTTTTCCCGAAGGAGGGTGTTACCGGTTGGGCTGATACCACCATGCTGCATAGCGAAGCGAAACATCCGGTTTGCGCCTACAAATGGA > 1:562881/1‑149 CAGGGCGTTGGCCTGATAGGGCCAGGCACTGGAAGCCGAAGGCCAGCCTGTTGCTACCGTTTTCCCGAAGGAGGGTGTTACCGGTTGGGCTGATACCACCATGCTGCATAGCGAAGCGAAACATCCGGTTTGCGCCTACAAATGGATGA > 4:140108/1‑149 AGGGCGTTGGCCTGATAGGGCCAGGCACTGAAAGCCGAAGGCCAGCCTGTTGCTACCGTTTTCCCGAAGGAGGGTGTTACCGGTTGGGCTGATACC < 4:735954/96‑1 AGGGCGTTGGCCTGATAGGGCCAGGCACTGAAAGCCGAAGGCCAGCCTGTTGCTACCGTTTTCCCGAAGGAGGGTGTTACCGGTTGGGCTGATACC > 3:735954/1‑96 GGGCGTTGGCCTGATAGGGCCAGGCACTGGAAGCCGAAGGCCAGCCTGTTGCTGCCGTTTTCCCGAAGGAGGGTGTTACCGGTTGGGCTGATACCACCATGCTGCATAGCGAAGCGAAACATCCGGTTTGCGCCTACAAATGGATGAAC > 2:512009/1‑149 GGGCGTTGGCCTGATAGGGCCAGGCACTGGAAGCCGAAGGCCAGCCTGTTGCTACCGTTTTCCCGAAGGAGGGTGTTACCGGTTGGGCTGATACCACCATGCTGCATAGCGAAGCGAAACATCCGGTTTGCGCCTACAAATGGATGAAC > 3:769693/1‑149 cAGCCGAAGGCCAGCCTGTTGCTACCGTTTTCCCGAAGGAGGGTGTTACCGGTTGGGCTGATACCACCATGCTGCATAGCGAAGCGAAACATCCGGTTTGCGCCTACAAATGGATGAACTGGTCATTAACGCCAAAAGTGCAGGGCGAT < 3:129548/148‑1 AAGCCGAAGGCCAGCCTGTTGCTACCGTTTTCCCGAAGGAGGGTGTTACCGGTTGGGCTGATACCACCATGCTGCATAGCGAAGCGAAACATCCGGTTTGCGCCTACAAATGGATGAACTGGTCATTAACGCCAAAAGTGCAGGGCGAT < 3:1064242/149‑1 AAGCCGAAGGCCAGCCTGTTGCTACCGTTTTCCCGAAGGAGGGTGTTACCGGTTGGGCTGATACCACCATGCTGCATAGCGAAGCGAAACATCCGGTTTGCGCCTACAAATGGATGAACTGGTCATTAACGCCAAAAGTGCAGGGCGAT < 2:760706/149‑1 AAGCCGAAGGCCAGCCTGTTGCTACCGTTTTCCCGAAGGAGGGTGTTACCGGTTGGGCTGATACCACCATGCTGCATAGCGAAGCGAAACATCCGGTTTGCGCCTACAAATGGATGAACTGGTCATTAACGCCAAAAGTGCAGGGCGAT < 2:568149/149‑1 AAGCCGAAGGCCAGCCTGTTGCTACCGTTTTCCCGAAGGAGGGTGTTACCGGTTGGGCTGATACCACCATGCTGCATAGCGAAGCGAAACATCCGGTTTGCGCCTACAAATGGATGAACTGGTCATTAACGCCAAAAGTGCAGGGCGAT < 2:1195941/149‑1 GCCGAAGGCCAGCCTGTTGCTACCGTTTTCCCGAAGGAGGGTGTTACCGGTTGGGCTGATACCACCATGCTGCATAGCGAAGCGAAACATCCGGTTTGCGCCTACAAATGGATGAACTGGTCATTAACGCCAAAAGTGCAGGGCGATGT < 3:887447/149‑1 CCGAAGGCCAGCCTGTTGCTACCGTTTTCCCGAAGGAGGGTGTTACCGGTTGGGCTGATACCACCATGCTGCATAGCGAAGCGAAACATCCGGTTTGCGCCTACAAATGGATGAACTGGTCATTAACGCCAAAAGTGCAGGGCGATGTG > 3:81589/1‑149 CCGAAGGCCAGCCTGTTGCTACCGTTTTCCCGAAGGAGGGTGTT > 3:344359/1‑44 CCGAAGGCCAGCCTGTTGCTACCGTTTTCCCGAAGGAGGGTGTT < 4:344359/44‑1 TCCATTTGTAGGCGCAAACCGGATGTTTCGCTTCGCTATGCAGCATGGTGGTATCAGCCCAACCGGTAACACCCTCCTTCGGGAAAACGGTAGCAACAGGCTGGCCTTCGGCTTTCAGGGCGTTGGCCTGATAGGGCCAGGCACTGGAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1512560‑1512410‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcCGAAGGCCAGCCTGTTGCTACCGTTTTCCCGAAGGAGGGTGTTACCGGTTGGGCTGATACCACCATGCTGCATAGCGAAGCGAAACATCCGGTTTGCGCCTACAAATGGATGAACTGGTCATTAACGCCAAAAGTGCAGGGCGATGTG > NC_000913/1512451‑1512598 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |