| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,282,832 | C→G | 6.4% | intergenic (+31/+108) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,282,832 | 0 | C | G | 6.4% | 493.6 / 17.8 | 140 | intergenic (+31/+108) | rplY/yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| Reads supporting (aligned to +/- strand): ref base C (71/60); new base G (6/3); total (77/63) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 148 total aligned reads displayed.
CTACAGCGAAGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCAATTGGTCGCGC > NC_000913/2282684‑2282979 | cTACAGCGAAGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTcc > 2:317250/1‑149 (MQ=255) gCGAAGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCcg‑gcgg > 1:849178/1‑149 (MQ=255) gCGAAGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCcg‑gcgg < 1:317250/149‑1 (MQ=255) gCGAAGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCcg‑gcgg < 1:1315957/149‑1 (MQ=255) gCGAAGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCcg‑gcgg > 3:543457/1‑149 (MQ=255) gTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGttt < 1:1019564/149‑1 (MQ=255) ttCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGtttt > 2:1088208/1‑149 (MQ=255) ttCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGtttt > 1:728784/1‑149 (MQ=255) ttCTGAACATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCCGGA‑GCGGGGtttt < 2:36019/149‑1 (MQ=255) cTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGtttttt < 4:178531/149‑1 (MQ=255) cTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGtttttt < 3:1421068/149‑1 (MQ=255) ccATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTAt > 4:20590/1‑149 (MQ=255) aTCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCt > 3:595152/1‑149 (MQ=255) gttgttGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCa < 1:759384/149‑1 (MQ=255) tgACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTa > 2:490186/1‑149 (MQ=255) cGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGc < 3:1279229/149‑1 (MQ=255) gTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGtttttt < 1:17628/130‑1 (MQ=255) gTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGtttttt > 2:17628/1‑130 (MQ=255) aaaGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACTGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGa > 2:1154071/1‑149 (MQ=255) aaTCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACg < 1:1378805/149‑1 (MQ=255) aTCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACgg > 3:269658/1‑149 (MQ=255) aTCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACgg > 4:925206/1‑149 (MQ=255) tCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGt > 1:1047577/1‑149 (MQ=255) cAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTa < 3:820138/149‑1 (MQ=255) cAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTa > 3:1437664/1‑149 (MQ=255) aaaGTTAAAGGTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTAt > 4:938007/1‑149 (MQ=255) ttAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTAtt > 3:1410678/1‑146 (MQ=255) ttAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTAtt < 4:1410678/146‑1 (MQ=255) ttAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCt > 4:1303581/1‑149 (MQ=255) aGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTAttt > 2:1120284/1‑149 (MQ=255) gCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTAtttt > 2:681924/1‑149 (MQ=255) cTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTAttttt > 4:1136619/1‑149 (MQ=255) tCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTa < 4:724186/111‑1 (MQ=255) tCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTa > 3:724186/1‑111 (MQ=255) tCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTAtttttt > 1:1018603/1‑149 (MQ=255) tCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTAtttttt > 2:1317448/1‑149 (MQ=255) tCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTAtttttt < 1:1074231/149‑1 (MQ=255) cAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTg < 3:163160/149‑1 (MQ=255) gTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGcc > 1:10794/1‑149 (MQ=255) tACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCa < 2:1475033/149‑1 (MQ=255) tACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCa < 3:925206/149‑1 (MQ=255) aCAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAg > 1:143642/1‑149 (MQ=255) cGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATaa < 4:543457/149‑1 (MQ=255) cGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATaa < 4:661421/149‑1 (MQ=255) gTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAg < 3:421734/149‑1 (MQ=255) cACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGc < 2:10794/149‑1 (MQ=255) aCCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCg < 1:352688/149‑1 (MQ=255) ccGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGtt > 2:87967/1‑149 (MQ=255) ccGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGtt > 2:1111875/1‑149 (MQ=255) aCCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCAcgccgc < 1:490186/149‑1 (MQ=255) aCCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTGTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCAcgccgc > 4:316549/1‑149 (MQ=255) aaGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCt < 1:1108152/149‑1 (MQ=255) aGCTGCAGCACATCGACTTCGTTCGCGCTTAACTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTg < 3:434039/149‑1 (MQ=255) gcagcaCATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCAt > 2:620329/1‑149 (MQ=255) agcaCATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTACCTGCAGATTATGCCTGATTACGGTAGTGCTATTTTTTGCAGGCCAGCTAAGACGTTCACGCCGCAGCTGGCATTc > 3:1231986/1‑149 (MQ=255) agcaCATCGACTTCGTTCGCGCTTAATCTCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTc > 4:894677/1‑149 (MQ=255) acaTCGACTTCTGTCGCGCTTTATTGCGCAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGAGGGGTTTGTAGGTGCAAATTATGCCTGATTACGGTATTTCTACTTTGTGGATACCAGATACAGCCTTCCAACCCCATCTGGCATTAAGa > 4:858612/1‑149 (MQ=255) acaTCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATGCGGCGTGAACGCCTTATCTGGc > 3:316784/1‑142 (MQ=255) caTCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCGTCTGGCATTCAGaa < 1:1111875/149‑1 (MQ=255) caTCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGaa < 3:574001/149‑1 (MQ=255) aTCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAac > 4:345981/1‑149 (MQ=255) aCTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGc > 4:1222172/1‑108 (MQ=255) aCTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGc < 3:1222172/108‑1 (MQ=255) aCTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACaa > 2:129071/1‑149 (MQ=255) ttcgttcgCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACaaaa > 1:874116/1‑149 (MQ=255) ttcgCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACaaaa < 3:663311/145‑1 (MQ=255) ttcgCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACaaaa > 4:663311/1‑145 (MQ=255) tcgCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGAt < 2:874116/149‑1 (MQ=255) tcgCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGAt > 2:9734/1‑149 (MQ=255) gcTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTag > 2:1054604/1‑85 (MQ=255) gcTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAAt < 3:1287069/149‑1 (MQ=255) cTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAAtt < 1:122984/149‑1 (MQ=255) ttAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGc > 1:1186384/1‑105 (MQ=255) ttAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGc < 2:1186384/105‑1 (MQ=255) tAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCGGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTgc < 3:938007/149‑1 (MQ=255) aaTTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTgcc > 4:506825/1‑149 (MQ=255) aTTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGaa < 3:1427421/128‑1 (MQ=255) aTTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGaa > 4:1427421/1‑128 (MQ=255) ttGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTgccgc > 1:95426/1‑149 (MQ=255) tGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTGTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGa > 4:1379755/1‑149 (MQ=255) aaGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTcc < 3:894677/149‑1 (MQ=255) ttGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGgc > 4:73554/1‑149 (MQ=255) acaaaaaaCCCCGCCGGA‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGgcgc > 2:309808/3‑149 (MQ=39) tAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCt > 3:286484/1‑149 (MQ=255) aaaaaaCCCCGCCGGA‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTg > 3:1302110/1‑149 (MQ=255) aaaaaaCCCCGC‑CGGAGCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTg > 1:244874/1‑149 (MQ=39) aaaaaCCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAg > 4:1102411/1‑82 (MQ=255) aaaaaCCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAg < 3:1102411/82‑1 (MQ=255) aaaaaCCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGc > 1:581810/1‑149 (MQ=255) aaaaaCCCCGCCGGA‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGaa > 1:577355/1‑110 (MQ=38) aaaaaCCCCGCCGGA‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGaa < 2:577355/110‑1 (MQ=38) aaaaCCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGGGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCa > 2:407505/1‑149 (MQ=255) aaCCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCAAt < 2:994453/149‑1 (MQ=255) cccGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCAcg > 3:958724/1‑85 (MQ=255) cccGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCAATTgg > 1:96236/1‑149 (MQ=255) cccGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCAATTgg < 3:575777/149‑1 (MQ=255) cccGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCAATTgg > 3:1061726/1‑149 (MQ=255) cTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCAATTGGTcgc < 3:494538/149‑1 (MQ=255) tCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCAATTGGTcgcg > 3:723668/1‑149 (MQ=255) ccG‑GCGGGGTTTTTTGTGTCTGCAGATTATGCCTGATTACGGTATTGCTCTTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAGTTGCCGCCAGACGTCCGGCGCTGCAATTGGTCgcgc < 4:1231986/149‑1 (MQ=255) | CTACAGCGAAGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCTCCG‑GCGGGGTTTTTTGTATCTGCAGATTATGCCTGATTACGGTATTGCTATTTTTTGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTCAGAACACAAAACCGATTAATTGCCGCCAGACGTCCGGCGCTGCAATTGGTCGCGC > NC_000913/2282684‑2282979 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |