| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,807,638 | T→G | 6.5% | E154A (GAA→GCA) | waaQ ← | lipopolysaccharide core biosynthesis protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,807,638 | 0 | T | G | 6.5% | 2326.8 / 123.5 | 684 | E154A (GAA→GCA) | waaQ | lipopolysaccharide core biosynthesis protein |
| Reads supporting (aligned to +/- strand): ref base T (307/330); new base G (23/22); total (330/354) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.59e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.49e-01 | |||||||||||
Only 100 of 699 total aligned reads displayed.
GCCTCGCTGTTGCAGCGCATCGATAACCTTAGAAAATTTATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCAT > NC_000913/3807490‑3807785 | ccTCGCTGTTGCAGCGCATCGATAACCTTAGAAAATTTATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGACCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTc < 3:1180585/149‑1 (MQ=255) cTCGCTGTTGCAGCGCATCGATAACCTTAGAAAATTTATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCg < 3:640702/149‑1 (MQ=255) cTCGCTGTTGCAGCGCATCGATAACCTTAGAAAATTTATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCg < 2:1433706/149‑1 (MQ=255) cTCGCTGTTGCAGCGCATCGATAACCTTAGAAAATTTATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCg > 2:255127/1‑149 (MQ=255) tCGCTGTTGCAGCGCATCGATAACCTTAGAAAATTTATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCgg > 2:1287554/1‑149 (MQ=255) tCGCTGTTGCAGCGCATCGATAACCTTAGAAAATTTATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCgg > 3:1150519/1‑149 (MQ=255) tCGCTGTTGCAGCGCATCGATAACCTTAGAAAATTTATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCgg < 1:227442/149‑1 (MQ=255) gTTGCAGCGCATCGATAACCTTAGAAAATTTATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTaa > 4:162190/1‑149 (MQ=255) cAGCGCATCGATAACCTTAGAAAATTTATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTGCGGCGTAACTCa < 2:686614/149‑1 (MQ=255) gcgcATCGATAACCTTAGAAAATTTATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCAtt < 4:1207302/149‑1 (MQ=255) gcgcATCGATAACCTTAGAAAATTTATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCAtt > 3:1287372/1‑149 (MQ=255) gcgcATCGATAACCTTAGAAAATTTATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCAtt < 2:830617/149‑1 (MQ=255) gcgcATCGATAACCTTAGAAAATTTATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTGCGGCGTAACTCAtt > 1:337569/1‑149 (MQ=255) aTAACCTTAGAAAATTTATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTc > 4:1142226/1‑149 (MQ=255) tAACCTTAGAAAATTTATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCg < 1:538844/149‑1 (MQ=255) aCCTTAGAAAATTTATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGgt < 3:1419890/149‑1 (MQ=255) aCCTTAGAAAATTTATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGgt < 4:793088/149‑1 (MQ=255) cTTAGAAAATTTATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGgtgt < 4:925955/149‑1 (MQ=255) cTTAGAAAATTTATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGgtgt > 1:1219951/1‑149 (MQ=255) ttAGAAAATTTATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTa > 1:451217/1‑149 (MQ=255) tttATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCgg > 3:224402/1‑149 (MQ=255) tttATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCgg < 2:1219951/149‑1 (MQ=255) ttATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGt < 2:720461/149‑1 (MQ=255) ttATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGt < 4:1402514/149‑1 (MQ=255) ttATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCg > 4:1247294/1‑141 (MQ=255) ttATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATAcc < 3:551671/149‑1 (MQ=255) tCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTaa < 2:335744/149‑1 (MQ=255) cccAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCAttgttg > 1:672451/1‑120 (MQ=255) cccAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAAt > 3:788770/1‑149 (MQ=255) ccAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATg < 1:381531/149‑1 (MQ=255) cAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATAc < 4:363960/142‑1 (MQ=255) cAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATgg > 4:862292/1‑149 (MQ=255) cAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATgg > 4:1353197/1‑149 (MQ=255) aaCACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGc > 1:581753/1‑149 (MQ=255) ttAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCAttgtt < 2:58370/111‑1 (MQ=255) ttAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAg > 1:1148095/1‑149 (MQ=255) aaaTATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTGCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGa < 3:61201/149‑1 (MQ=255) tatCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCg > 1:504792/1‑149 (MQ=255) gACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAGTTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATaaa < 2:1476154/149‑1 (MQ=255) gACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATaaa < 4:178460/149‑1 (MQ=255) cgcTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTAc < 3:1081963/149‑1 (MQ=255) ggTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGAt < 4:40538/135‑1 (MQ=255) ggATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAAt < 1:26989/102‑1 (MQ=255) tGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATAtgt < 3:1445457/149‑1 (MQ=255) gACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGaaa < 3:429816/97‑1 (MQ=255) gACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGaaa > 4:429816/1‑97 (MQ=255) gACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATAc > 4:743336/1‑107 (MQ=255) gACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATAc < 3:743336/107‑1 (MQ=255) gACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATAtgtg > 3:496679/1‑149 (MQ=255) caacaTAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTa > 3:911479/1‑149 (MQ=255) aacaTAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTAc > 3:205229/1‑149 (MQ=255) aacaTAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTAc < 4:679946/149‑1 (MQ=255) aacaTAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTAc > 4:256579/1‑149 (MQ=255) aTAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCgt < 2:934173/149‑1 (MQ=255) aTAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCgt > 1:726033/1‑149 (MQ=255) aTAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTGCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCgt < 4:641253/149‑1 (MQ=255) tGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTAt > 2:774634/1‑149 (MQ=255) gATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTAtt < 1:779737/149‑1 (MQ=255) gATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTGCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTAtt > 3:297521/1‑149 (MQ=255) aTCTTTTACGCCCAGGGTATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATaaa < 2:474281/118‑1 (MQ=255) tCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTgg < 2:1076838/149‑1 (MQ=255) ttttACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGgcg > 3:34461/1‑149 (MQ=255) ttttACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGgcg > 4:1090613/1‑149 (MQ=255) tttACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGgcgc < 1:1435306/149‑1 (MQ=255) tttACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGgcgc < 4:1048586/149‑1 (MQ=255) gCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAgt > 4:555802/1‑149 (MQ=255) ccAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAgtgt < 3:72010/149‑1 (MQ=255) ccAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAgtgt > 2:226622/1‑149 (MQ=255) aGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAgtgtgt > 1:1192641/1‑149 (MQ=255) gCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGaa < 4:14334/149‑1 (MQ=255) tCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCt > 4:716715/1‑149 (MQ=255) tCTAATCCCCGGCGCATCTTCTGCCAGCAATCTTCGGCGTACATGATTGTTGTGTAAGTGTAGAAATCCGTAATACTTAATGGCTCAAGGACCGATAAATTACTGTTAACCCCACGGGCACCGTGTATTGGCGCAAAGTGTTTTAAGCt < 2:1015945/149‑1 (MQ=255) tAATTCCCGGCGCATCTTCTTCCAGCAATCTGCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATAGCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCttt > 4:1265683/1‑149 (MQ=255) tAATTCCCGGCGCATCATCTTCCAGCAATCTTCGGCGTAACTCATAGTTGTGCCGGTGTAGAAATCGGTAATACCTAATGGCTCaa > 4:222779/1‑86 (MQ=255) aaTTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTAtt < 2:1365676/126‑1 (MQ=255) aaTTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCtttt < 1:1073554/149‑1 (MQ=255) ttCCCGGCGCATCTTCTTCCAGCAATCTGCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCtttttt < 1:943268/149‑1 (MQ=255) tCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTTGGTGTAGAAATCGGTAATTCCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACTGTGTATTGGCTCTAAATGTGTGAAGAttttttt < 2:418616/149‑1 (MQ=255) tCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCttttttt > 2:1158288/1‑149 (MQ=255) cccGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTaa > 4:318025/1‑130 (MQ=255) ccGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTcc < 2:641303/149‑1 (MQ=255) ccGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTcc < 3:168429/149‑1 (MQ=255) cgcATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAAt < 1:180513/149‑1 (MQ=255) gcATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATa < 1:1028417/149‑1 (MQ=255) cATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATAc < 3:697977/149‑1 (MQ=255) tcttctTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAAt < 3:365389/84‑1 (MQ=255) tcttctTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAgtgtgt < 2:868967/127‑1 (MQ=255) tcttctTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAgtgtgt > 1:868967/1‑127 (MQ=255) tcttctTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCa < 3:864635/149‑1 (MQ=255) tcttctTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCa > 1:1276314/1‑149 (MQ=255) ttcCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAata < 1:1339369/93‑1 (MQ=255) aGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGa > 3:1360/1‑66 (MQ=255) aGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATAtg > 2:979174/1‑91 (MQ=255) aGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCaaa > 4:596700/1‑135 (MQ=255) gCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGAt > 3:1252129/1‑149 (MQ=255) aaTCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAgtgtg < 1:1106508/114‑1 (MQ=255) aaTCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGa < 4:483358/149‑1 (MQ=255) aaTCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGa < 1:1392917/149‑1 (MQ=255) ttCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCAt > 2:528995/1‑149 (MQ=255) ttCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCAt < 2:1098361/149‑1 (MQ=255) | GCCTCGCTGTTGCAGCGCATCGATAACCTTAGAAAATTTATCGTTATCCCAACACTTAAATATCTGACGCGCTGTCGGTTGGATGACAACATAATGATCTTTTACGCCCAGGGCATCTAATTCCCGGCGCATCTTCTTCCAGCAATCTTCGGCGTAACTCATTGTTGTGTCGGTGTAGAAATCGGTAATACCTAATGGCTCAAGGACCGATAAATTACGCTCAACAATATGTGTACCGTGTATTGGCGCTAAGTGTGTGAAGCTTTTTTTCCAAATACCATGCTGCCGATGACCAT > NC_000913/3807490‑3807785 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |