| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4450215 = | 226 (0.870) | 4 (0.020) | 4/282 | NT | 1.8% | coding (254/957 nt) | ytfQ | galactofuranose ABC transporter periplasmic binding protein |
| ? | NC_000913 | 4450233 = | 222 (0.880) | coding (272/957 nt) | ytfQ | galactofuranose ABC transporter periplasmic binding protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGCCTTCGAGGATGTTGTCGGCAGTGACGGTGGTCATATAGAGAGATTTGTCTTTCACATCAATGGAACGATCGAGCAAGAATACCGGGATTTCGGCATCTTTCGCCTCTTTTAATACCGGTTCCCAACCTGTCGCGACCACCGGAGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4450365‑4450215‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgaCAGGTTGGGAACCGGTATTAAAAGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGACAACATCCTCGAAGGCAAGTTGATTGGTGA > NC_000913/4450233‑4450377 TTGCCTTCGAGGATGTTGTCGGCAGTGACGGTGGTCATATAGAGAGATTTGTCTTTCACATCAATGGAACGATCGAGCAAGAATACCGGGATTTCGGCATCTTTCGCCTCTTTTAATACCGGTTCCCAACCTGTCGCGACCACCGGAGC < 6:944442/149‑1TTGCCTTCGAGGATGTTGTCGGCAGTGACGGTGGTCATATAGAGAGATTTGTCTTTCACATCAATGGAACGATCGAGCAAGAATACCGGGATTTCGGCATCTTTCGCCTCTTTTAATACCGGTTCCCAACCTGTCGCGACCACCGGAGC > 7:768796/1‑149 ACCTGTCGCGACCACCGGAGCGACAGGTTGGGAACCGGTATTAAAAGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATC > 5:1715391/1‑86 ACCTGTCGCGACCACCGGAGCGACAGGTTGGGAACCGGTATTAAAAGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATC < 6:1715391/86‑1 TCGCGACCACCGGAGCGACAGGTTAGGAACCGGTATTAAAAGAGGCGAAAGA < 5:324318/52‑1 TCGCGACCACCGGAGCGACAGGTTAGGAACCGGTATTAAAAGAGGCGAAAGA > 6:324318/1‑52 GCGACAGGTTGGGAACCGGTATTAAAAGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGACAACATCCTCGAAGGCAAGTTGATTGGTGA > 6:329243/1‑149 GACAGGTTGGGAACCGGTATTAAAAGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGACAACATCCTCGAAGGCAA < 7:740115/135‑1 GACAGGTTGGGAACCGGTATTAAAAGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGACAACATCCTCGAAGGCAA > 8:740115/1‑135 TTGCCTTCGAGGATGTTGTCGGCAGTGACGGTGGTCATATAGAGAGATTTGTCTTTCACATCAATGGAACGATCGAGCAAGAATACCGGGATTTCGGCATCTTTCGCCTCTTTTAATACCGGTTCCCAACCTGTCGCGACCACCGGAGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4450365‑4450215‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgaCAGGTTGGGAACCGGTATTAAAAGAGGCGAAAGATGCCGAAATCCCGGTATTCTTGCTCGATCGTTCCATTGATGTGAAAGACAAATCTCTCTATATGACCACCGTCACTGCCGACAACATCCTCGAAGGCAAGTTGATTGGTGA > NC_000913/4450233‑4450377 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |