New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4171445	NA (NA)	10 (0.040)	18/284	NT	NA	noncoding (2805/2904 nt)	rrlB	23S ribosomal RNA of rrnB operon
	?	NC_000913	= 4212832	NA (NA)					noncoding (2790/2904 nt)	rrlE	23S ribosomal RNA of rrnE operon

TGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGCTGGAGAACTGAGGGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGA‑TAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTG  >  NC_000913/4171208‑4171717                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                                 tggtacagaaGCTGGGTTTATAGAGTCGGAGGACATTACAGGCCCTTACAGCCGGGGGGACTGGAGAACGTGGGGGAGCTGCTCCTAGTACGGGAGGACCGGAGTGGACGCATCACTGGTGTTCAAGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGA‑TAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGcc                                                                                                                                                                                                                                              <  4:469713/265‑1 (MQ=1)        cgggCTGGGTTTGGAACGTCGTGGGACAGGTCGGTCCCTATCTGCCGTGGGAGCTGGAGAACTGAGGGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGA‑TAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGAAGACGAAGACGTTGATAGGCCGGgtgtgt                                                                                                                                                                                                                                      <  4:584630/272‑1 (MQ=0)                                                           gccgggggaACTTGGGGGTGCGGATCCTGGTACGAGAGGACCGGGGTGGACGCATTGCTGGTGTGCGGGTTGTCATGCAAAGGGCACTGCCCGGTAGCTGAATGCGGAGGGGA‑TAAGTGCTGGAAGCATTTCAGCACGAAACTGGCCCCGAGATGAGTTCGCCCTGACCCTGTAAGGGTCCTGAAGGATCGTTGAAGACGACGAGGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTaa                                                                                                                                                                                   <  4:526564/268‑1 (MQ=1)                                                                                                        ggggaggaatgaCTGGTGTTCGGGTTGTCAGGCCAATGGCACTGTCCGGTAGCTAAATGCGGAAGAGA‑TAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTGCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGAtttt                                                                                                                                        <  2:517402/262‑1 (MQ=0)                                                                                                                               gtgtggaagcaaaTGGGACAGCCCGGTAGCTAAATGCGGAAGGGG‑TAAGGGCTGAAAGCAGCTAAGCACGAAACTGGCCCCGAGATGAGTGCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTGGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAGTGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGaa                                                                                                               <  4:416559/264‑1 (MQ=1)                                                                                                                                             gggaCTGCCGGGTAGCTAAAATCGGAA‑AGAGTAAGTGCGAAAAGCATCGAAGTATGGAACTGGGCCCAAGAGTGGTTCTCCCTGCCCCTTGTAGGGTCTGGGTGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTAGGTAAGCGCAGCGATGCGTTGGGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTGACAACGGCGAAGCTGTTTTGGCGGATGAGGGAAGATTTTCAGCCTGATACAGATTAAAGCAGAACGCAGAAGCGGTc                                                                                                  <  4:243951/271‑1 (MQ=1)                                                                                                                                                              aaataaggaggaGA‑AAAGTGAAAAAAGCATCAAAGCGCAAAACTTGCCCCGAGGTAAGTACTCGCTTACCCATTAAGGATGCGGAAGGAACGTTGAAGACGAAGACGTTGATAGACCGGATGTGTAAGCGCAGCGAAGCTTTGGGCTAACCGGTACTAATGAACCATGAGGCTTAACATTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGAAGAAGCGGTCTGATAAAACAAAATTTGc                                                                                <  4:378532/269‑1 (MQ=1)                                                                                                                                                                                atGCTGAAAGCATCTAAGCACGAAAATTGCGCCGTGATGAGTTTTCCCGGACCCTTTAAGGGTCCTGAAGGAAGGTTGAAGACGGCGACGTTGATAGGCCGGGTGTGTAAGCTCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGGGGCTTAACCTTGCAACGCCGATGCTGTTTTGGCGGATGAGAGAAGATTTTCAGGCTGATACAGATTAAATCAGAACGAAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGcgcg                                                               <  4:343339/274‑1 (MQ=11)                                                                                                                                                                                      aaaTCATCTAAGCACGAAACTTGCCCCGATATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGTTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAGCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTc                                                         <  2:551151/275‑1 (MQ=14)                                                                                                                                                                                      aaaGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTc                                                         <  4:494408/275‑1 (MQ=31)                                                                                                                                                                                                     gAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGGCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATg                                          <  2:529526/275‑1 (MQ=14)                                                                                                                                                                                                                   natgatgtttcCCTGACCCTTTAAGGGTGCTGCAGTAACGTTGAAGAGGGCGTAGTTGATAGGACGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAANGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTc                                                         <  3:194950/237‑1 (MQ=11)                                                                                                                                                                                                                         ttCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTT‑ACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCACATGCCGAAATCAAAAGTGACACGCCGTa                 >  1:295575/1‑279 (MQ=9)                                                                                                                                                                                                                                 gACCCTTTAAGGGTCCTGAAGGAACGTTGACGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTGTCAGCCTGATACAGATCAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGAAGTAGCGGAGTGGTACAACCTGACCCCATGACGAAATCCGAAGGGAAACGCCGTGgcc              >  4:229430/1‑274 (MQ=11)                                                                                                                                                                                                                                        tAAGGGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAACTCAGAACGCAGAAGCGGTCTGATATAACAGAATTTGCCTGGCGGCAGTAGCTCGTTGGTCACACCTGACCCCACGCCGAACCCAGAAGTGAAACGCCGTAGCGCCGATg        >  4:298851/1‑274 (MQ=9)                                                                                                                                                                                                                                             gTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAgtg  <  2:578479/275‑1 (MQ=31)                                                                                                                                                                                                                                             gTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAgtg  <  2:278090/275‑1 (MQ=31)                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                                 TGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGCTGGAGAACTGAGGGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGA‑TAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTG  >  NC_000913/4171208‑4171717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.