New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3470277 =	NA (NA)	9 (0.040)	9/276	NT	NA	coding (1053/1185 nt)	tufA	translation elongation factor EF‑Tu 1
	?	NC_000913	3470311 =	NA (NA)					coding (1019/1185 nt)	tufA	translation elongation factor EF‑Tu 1

TACGAATAAGATATGCCGTCAACAAATGCAAAAAGGGCGCCGAAGCGCCCTTTTCAATTCAAAACTAATTAACGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGACGGCCGCCTTCATCTTTGGACAGAATGTACACTTCAGATTCGAACTTGGTGTGCGGCTTGATGGTGCCCGGCTTAGCCAGTACCTGACCACGTTCGATTTCTTCACGTTTGATACCACGCAGCAGAACACCTACGTTCTCACCAGCACGGCCTTCGTCCAGCAGTTTGCGGAACATTTCAACGC  >  NC_000913/3470066‑3470557                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                       tACGAATAAGATATGCCGTCAACAAATGCAAAAAGGGCGCCGAAGCGCCCTTTTCAATTCAAAACTAATTAACGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCCTCTCTCCGCCTTCCGGCAGTTCGATGGTTCCAGTCACGTCAGTATTACGGATGTAGa                                                                                                                                                                                                                             >  2:552731/1‑273 (MQ=255)  aCGAATAAGATATGCCGTCAACAAATGCAAAAAGGGCGCCGAAGCGCCCTTTTCAATTCAAAACTAATTAACGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACt                                                                                                                                                                                                                          >  2:674432/1‑275 (MQ=255)           atatGCCGTAAACAACATCAAAAAGGCGGCCGAAGGTCCCTTTTCAATTCAAAACTAACTAGCGTGCAATTGGCCCAGACCTTTAGCAACAACTACCGCGCAAAAGGTACGGCCGCCTTCAAGGGTTAAGAAACGCATACCATGATCAATCACGATGGGGTAGATGAGGGTAACAACAAATTTGATGTTGTCGCCCGGCATTACCATCTCTAAGCCTGCCGGCAGTTCGATGGTACCAGTCAAGTCAGTAGTACAGAAGTAGAACTGCGGACGGt                                                                                                                                                                                                                 <  4:129699/275‑1 (MQ=9)               gCCGTCAACAAATGCAAAAAGGGCGCCGAAGCGCCCTTTTCAATTCAAAACTAATTAACGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGcc                                                                                                                                                                                                             >  2:653709/1‑275 (MQ=255)                   tCAACAAATGCAAAAAGGGCGCCGAAGCGCCCTTTTCAATTCAAAACTAATTAACGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTACCAGTCACGt                                                                                                                                                                                                                                               <  2:577165/237‑1 (MQ=255)                                      cgcCGAAGCGCCCTTTTCAATTCAAAACTAATTAACGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACCCCTTCCGGCAATTCGATGGTACCAGTCACGTCCGTAATTCGGAAGTAGAACTGAGGACGGTAGCCTTTGAAGCACGGAGTATGACGgc                                                                                                                                                                                      >  4:123622/1‑275 (MQ=255)                                                             aaaaCTAATTAACGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACCGCGGACGGTAGCCTTTGAAGAAAGGAGTATGACGGCCGCCTTCATCTTTGGAAAGaag                                                                                                                                                                >  4:363918/1‑273 (MQ=255)                                                                    aTTAACGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTGGCCTTTTAAGAACGGAGTATGACANNNGCCGTCATCTTTGGACAGAATTTACAACTCAGa                                                                                                                                                    >  3:269125/1‑279 (MQ=255)                                                                                    cccAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGACGGCCGCCTTCATCTTTGGACAGAATGTa                                                                                                                                                             <  1:14743/254‑1 (MQ=33)                                                                                                  aacaacGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGT‑ACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTAcc                                                                                                                                                                                                                                                       >  8:1605263/1‑149 (MQ=11)                                                                                                  aacaacGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGACCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTAc                                                                                                                                                                                                                                                        >  6:728647/1‑149 (MQ=11)                                                                                                                                                  cggatcgtcgtCCATCGCGAGCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGACGGCCGCCTTCATCTTTGGACAGAATGTACACTTCAGATTCGAACTTGGTGTGCGGCTTGATGGTGCCCGGCTTAGCCAGTACCTGACCACGTTCGATTTCTTCACGTTTGa                                                                          <  2:408422/270‑1 (MQ=1)                                                                                                                                                                                                          tgcgtgtgctttccATCTCTGCGCCGTGCGGGAGTTTGTTGTGAGCTGTCACTGCAGTAGTACGGAAGTCGAACGTCGGACGGTAGCCTTTGAAGGACGGTGTATGACGGCCGCCTGCATCTGTGGACAGAATGTACACTTCAGATTCGATATTGTGGGGCGGTTTGATGGTGCTCGGCTCAGCCAGTACCTGACATCGTTCGATTTCTTCACGCTTGATAGCACGCAGCATAACACCTACGTTCTCACCCGCACGGCCTTCGTCCAGCGGTTTg                  <  4:355374/263‑1 (MQ=0)                                                                                                                                                                                                          agcacGGCATTACCATCTCTACGCCTTCAGGCATTTCGATGGTTCCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGACGGCCGCCTTCATCTTTGGACAGGATGTACACTTCAGATTCGAACTTGGTGTGCGGCTTGATGGTGCCCGGCTTAGCCAGTACCTGACCACGTTCGATTTCTTCACGTTTGATACCACGCAGCAGAACACCTACGTTCTCACCAGAACGGCCTTCGTCCAGCAGTTTg                  <  2:178306/271‑1 (MQ=0)                                                                                                                                                                                                                           ggtaggccgtgcGGCAGTTGGTTGGGACCAGGAACGGCAGAAGTACGGAAGTAGAACTGCGGCAGGTAGCCTGTGAAGAACGGAGTATGACGGCCGCCTTCATCCTTGGACAGAATGTAATCTGCAGATTCGAACTTGGTGTGCGGCTTGATGGTGACCGGCTTAGCCAGTACCTGACCACGGTCGATTTCGTCACGTGTGGTACCACGCAGCAGAACACCGACGTTCTCACCAGAACGGCCTTCGTCCAGCAGTTTGCGGAACAGTTCAACGc  <  4:674172/263‑1 (MQ=1)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                       TACGAATAAGATATGCCGTCAACAAATGCAAAAAGGGCGCCGAAGCGCCCTTTTCAATTCAAAACTAATTAACGTGTAATTAGCCCAGAACTTTAGCAACAACGCCCGCGCCAACGGTACGGCCGCCTTCACGGATTGCGAAACGCAGACCGTCGTCCATCGCGATCGGGTGGATCAGGGTAACAACCATTTTGATGTTGTCGCCCGGCATTACCATCTCTACGCCTTCCGGCAGTTCGATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGACGGCCGCCTTCATCTTTGGACAGAATGTACACTTCAGATTCGAACTTGGTGTGCGGCTTGATGGTGCCCGGCTTAGCCAGTACCTGACCACGTTCGATTTCTTCACGTTTGATACCACGCAGCAGAACACCTACGTTCTCACCAGCACGGCCTTCGTCCAGCAGTTTGCGGAACATTTCAACGC  >  NC_000913/3470066‑3470557

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.