Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,959,515 T→A 5.5% intergenic (+70/+17) ilvC → / ← ppiC ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,959,5150TA 5.5% 935.4 / 30.1 272intergenic (+70/+17)ilvC/ppiCketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C)
Reads supporting (aligned to +/- strand):  ref base T (137/116);  new base A (4/11);  total (143/129)
Fisher's exact test for biased strand distribution p-value = 5.97e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.75e-01

Only 100 of 277 total aligned reads displayed.

ACGCTTGTGTGCCGTTGCTGAAACCGTTTATGGCAGAGCTGCAACCGGGCGACCTGGGTAAAGCTATTCCGGAAGGCGCGGTAGATAACGGGCAACTGCGTGATGTGAACGAAGCGATTCGCAGCCATGCGATTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGAATTCACCTAAATCACCGCCGCGTTTGCCTGATGGGCAAATGGAGTGTTTCTTCGCCAGCTTGCCGAAATCGGCCCCGTTCTTAATCTGCTCGAGAAGATCCAGAGCCAGTTTCTCTTCTTTTACAAGG  >  NC_000913/3959246‑3959784
                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                              
aCGCTTGTGTGCCGTTGCTGAAACCGTTTATGGCAGAGCTGCAACCGGGCGACCTGGGTAAAGCTATTCCGGAAGGCGCGGTAGATAACGGGCAACTGCGTGATGTGAACGAAGCGATTCGCAGCCATGCGATTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGgaga                                                                                                                                                                                                                                                                          <  2:612574/275‑1 (MQ=255)
      gtgtgCCGTTGCTGAAACCGTTTATGGCAGAGCTGCAACCGGGCGACCTGGGTAAAGCTATTCCGGAAGGCGCGGTAGATAACGGGCAACTGCGTGATGTGAACGAAGCGATTCGCAGCCATGCGATTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGCAAACACTCAAGGCCTTCTCCTGGCGAAGGCCt                                                                                                                                                                                                                                                                    >  2:653274/1‑275 (MQ=255)
                                                                                                          gAACGAAGCGATTCGCAGCCATGCGATTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAAAAAACCACTTTAt                                                                                                                                                                >  2:30396/1‑275 (MQ=255)
                                                                                                                         cAGCCATGCGATTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAACACTCAAGGCCTTCTCCTg                                                                                                                                                                                                                                                                               <  7:616649/149‑1 (MQ=255)
                                                                                                                               tGCGATTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGCCCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGTTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGACCCCTCTGACCCt                                                                                                                                        >  1:266340/1‑278 (MQ=255)
                                                                                                                                   aTTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAGCACTCAAGGCCTTCTCCAGGAGAAGGcc                                                                                                                                                                                                                                                                     <  5:439158/149‑1 (MQ=255)
                                                                                                                                     tgtgCAGGTAGGTAAGAACCGTCGCGGCTATACGACAGATTTCAACCGTTTGGCTGTTGCGGGTTAAGTGGGCGCTGATGCCCTCACCCCGACCCTCTCCCCACGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTgg                                                                                                                                      <  4:404321/271‑1 (MQ=255)
                                                                                                                                       aGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGc                                                                                                                                                                                                                                                                 <  6:1428023/149‑1 (MQ=255)
                                                                                                                                          aggtaggtAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTAt                                                                                                                                                                                                                                                              >  7:132827/1‑149 (MQ=255)
                                                                                                                                            gaaggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGGTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa                                                                                                                                                                                                                                                            >  5:1507508/3‑149 (MQ=255)
                                                                                                                                                 taAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc                                                                                                                                                                                                                                                       >  6:609174/1‑149 (MQ=255)
                                                                                                                                                 taAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc                                                                                                                                                                                                                                                       >  6:1555686/1‑149 (MQ=255)
                                                                                                                                                 taAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc                                                                                                                                                                                                                                                       >  8:217502/1‑149 (MQ=255)
                                                                                                                                                 taAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc                                                                                                                                                                                                                                                       >  5:1143423/1‑149 (MQ=255)
                                                                                                                                                   aGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg                                                                                                                                                                                                                                                     <  8:356601/149‑1 (MQ=255)
                                                                                                                                                          gcgcGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCa                                                                                                                                                                                                                                              <  5:183623/149‑1 (MQ=255)
                                                                                                                                                          gcgcGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAatgat                                                                                                                                                                                                                                    <  1:296759/159‑1 (MQ=255)
                                                                                                                                                           cgcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGga                                                                                                                                                                                                                                                                             >  4:70811/1‑118 (MQ=255)
                                                                                                                                                           cgcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCGCCTGGAGNAGGCCTTNCTANTAGTTGNGGTACAg                                                                                                                                                                                                                                                >  3:35852/1‑146 (MQ=255)
                                                                                                                                                            gcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAcc                                                                                                                                                                                                                                            <  8:1185798/149‑1 (MQ=255)
                                                                                                                                                            gcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAcc                                                                                                                                                                                                                                            >  6:233521/1‑149 (MQ=255)
                                                                                                                                                                cTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa                                                                                                                                                                                                                                        <  6:1143423/149‑1 (MQ=255)
                                                                                                                                                                   tatGACAGATAAGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAatga                                                                                                                                                                                                                                     >  7:985842/1‑149 (MQ=255)
                                                                                                                                                                     tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCt                                                                                                                                                                                                                                                                    <  8:554636/116‑1 (MQ=255)
                                                                                                                                                                     tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCANCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGACAACCACTTTATCGANTGGCGGCAACATCTGACCCCGGCGGNATTCACCAAAACAACCCCCCCGCTTGCCtcagg                                                                                                 >  3:165426/1‑275 (MQ=255)
                                                                                                                                                                       aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAtgtg                                                                                                                                                                                                                                 <  8:1272918/149‑1 (MQ=255)
                                                                                                                                                                         aGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGat                                                                                                                                                                                                                               >  7:1039003/1‑149 (MQ=255)
                                                                                                                                                                            tatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATc                                                                                                                                                                                                                            >  7:245625/1‑149 (MQ=255)
                                                                                                                                                                             atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATcc                                                                                                                                                                                                                           <  8:942002/149‑1 (MQ=255)
                                                                                                                                                                             atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATcc                                                                                                                                                                                                                           <  5:1198149/149‑1 (MQ=255)
                                                                                                                                                                                 aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAAc                                                                                                                                                                                                                       <  7:434759/149‑1 (MQ=255)
                                                                                                                                                                                    gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTgg                                                                                                                                                                                                                    <  6:1641080/149‑1 (MQ=255)
                                                                                                                                                                                    gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTgg                                                                                                                                                                                                                    <  8:343261/149‑1 (MQ=255)
                                                                                                                                                                                    ctATTGCTGTTGCGGGTTAAGTGCGCGCTGCTGCCCTCACCCCGACCCTGTCCCACAGGGAGAGGGAGAAACCACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTgg                                                                                                                                                                                                                    <  6:1507508/148‑1 (MQ=255)
                                                                                                                                                                                     tATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTTCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGaa                                                                                                                                                                           >  1:51520/1‑189 (MQ=255)
                                                                                                                                                                                               gCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAtgt                                                                                                                                                                                                                                  >  4:737717/1‑124 (MQ=255)
                                                                                                                                                                                               gCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGAATTCACCTAAATCACCGCCGCGTTTGCCTGATGGGCAAATGGAGTGTTTCTTCg                                                                            >  2:225244/1‑274 (MQ=255)
                                                                                                                                                                                                   gTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGaa                                                                                                                                                                                                                                                                         <  5:1415691/81‑1 (MQ=255)
                                                                                                                                                                                                   gTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCg                                                                                                                                                                                                     >  7:1461665/1‑149 (MQ=255)
                                                                                                                                                                                                   gTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCg                                                                                                                                                                                                     <  8:1093419/149‑1 (MQ=255)
                                                                                                                                                                                                              gcTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAg                                                                                                                                                                                          >  5:344101/1‑149 (MQ=255)
                                                                                                                                                                                                              gcTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAg                                                                                                                                                                                          >  6:199899/1‑149 (MQ=255)
                                                                                                                                                                                                                   tGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAGTGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCg                                                                                                                                                                                     >  7:40192/1‑149 (MQ=255)
                                                                                                                                                                                                                       cTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTc                                                                                                                                                                                                  >  5:1474485/1‑132 (MQ=255)
                                                                                                                                                                                                                        tCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAatgat                                                                                                                                                                                                                                    <  7:1243598/97‑1 (MQ=255)
                                                                                                                                                                                                                         cACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAag                                                                                                                                                                               <  5:992201/149‑1 (MQ=255)
                                                                                                                                                                                                                          aCCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAaga                                                                                                                                                                              <  8:1400708/149‑1 (MQ=255)
                                                                                                                                                                                                                            cccGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACaa                                                                                                                                                                                >  6:1341982/1‑145 (MQ=255)
                                                                                                                                                                                                                             ccGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGaa                                                                                                                                                                           >  7:1690310/1‑149 (MQ=255)
                                                                                                                                                                                                                             ccGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGCTGCGGTGCAGCACCTTAATGATGTGATATCCGAACTGAGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAgagac                                                                                                                                                                           >  5:1230400/1‑148 (MQ=255)
                                                                                                                                                                                                                              cGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGaaa                                                                                                                                                                          >  8:832641/1‑149 (MQ=255)
                                                                                                                                                                                                                               gACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGaaaa                                                                                                                                                                         <  7:507627/149‑1 (MQ=255)
                                                                                                                                                                                                                               gACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGaaaa                                                                                                                                                                         <  6:1259739/149‑1 (MQ=255)
                                                                                                                                                                                                                                aCCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACg                                                                                                                                                          >  4:118686/1‑163 (MQ=255)
                                                                                                                                                                                                                                aCCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGAATTCACCTAAATCACCGCCGCGTTTGCCTGATg                                                                                                 <  1:87386/220‑1 (MQ=255)
                                                                                                                                                                                                                                  ccTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCa                                                                                                                                                                      >  8:627316/1‑149 (MQ=255)
                                                                                                                                                                                                                                    tctcCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAAc                                                                                                                                                                        <  6:948994/145‑1 (MQ=255)
                                                                                                                                                                                                                                    tctcCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAAc                                                                                                                                                                        >  5:948994/1‑145 (MQ=255)
                                                                                                                                                                                                                                    tctcCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACt                                                                                                                                                                    >  8:1491245/1‑149 (MQ=255)
                                                                                                                                                                                                                                    tctcCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCgg                                                                                                                                                      <  2:118687/163‑1 (MQ=255)
                                                                                                                                                                                                                                     ctcCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTcc                                                                                                                                                                                            >  2:469827/1‑124 (MQ=255)
                                                                                                                                                                                                                                      tcCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAAc                                                                                                                                                                                                                       >  3:83163/1‑96 (MQ=255)
                                                                                                                                                                                                                                      tcCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACttt                                                                                                                                                                  >  5:195447/1‑149 (MQ=255)
                                                                                                                                                                                                                                        ccACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTAt                                                                                                                                                                >  5:67761/1‑149 (MQ=255)
                                                                                                                                                                                                                                             gggagagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAAc                                                                                                                                                           <  6:344101/149‑1 (MQ=255)
                                                                                                                                                                                                                                              ggagagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACg                                                                                                                                                          >  6:42473/1‑149 (MQ=255)
                                                                                                                                                                                                                                                agagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGcc                                                                                                                                                        >  5:228958/1‑149 (MQ=255)
                                                                                                                                                                                                                                                agagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGcc                                                                                                                                                        <  5:42473/149‑1 (MQ=255)
                                                                                                                                                                                                                                                agagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGAAtt                                                                                                                               >  4:533916/1‑174 (MQ=255)
                                                                                                                                                                                                                                                 gagggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCg                                                                                                                                                       >  6:1366716/1‑149 (MQ=255)
                                                                                                                                                                                                                                                  agggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAAACACTTTATCGAACGACGGAACCATCTGACCCTGGCGGAATTCACCTAAATCACCGCCCCGGTTTCCTGATGGGCAAAGGGAGTGTTTCTTCCCCCGCTTGCCGAAATCGGCCCCGGTCTTCCTTTGCTCGAGCAGCTCCaacac                        >  4:690136/1‑271 (MQ=255)
                                                                                                                                                                                                                                                   gggagaAAACACTCAAGGCTTTTTCCGGGGGTAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGAATTCACCTAAATCACCGCCGCGTTTGCCTGATGGGCAAATGGAGTGTTTCTTCGCCAGCTGGCCGAAATCGGCCCCGTTCTTAATCTGCTCGAGAAGATCCAGAGcc                       <  4:629330/275‑1 (MQ=255)
                                                                                                                                                                                                                                                   gggagaAAACACGCAAGACAGTTTCCGGAGTGTGGCGTTGGTATTGGTGGCGGTAACGCACCTGAATAGTGCGAGTGCCGGACGGGGTGGACAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTGATCGAACGCCTGAACCATCTGACCCTGGCGGAAGTCCCCTAAATCCCCGCCGCGTTTGACTGATGGGCAAATGGAGTGTTTCTTCGCCAGCTTGCCGAAATCGGCCCCGTTCTTAATCTGCTCGAGAAGATCCAGAGcc                       <  4:30396/275‑1 (MQ=255)
                                                                                                                                                                                                                                                    ggagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGAATTCAcc                                                                                                                           <  2:533920/174‑1 (MQ=255)
                                                                                                                                                                                                                                                     gagaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAAc                                                                                                                                                   >  5:781256/1‑149 (MQ=255)
                                                                                                                                                                                                                                                      agaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCggg                                                                                                                                                                                                        >  8:740385/1‑95 (MQ=255)
                                                                                                                                                                                                                                                      agaAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCggg                                                                                                                                                                                                        <  7:740385/95‑1 (MQ=255)
                                                                                                                                                                                                                                                        aaaaccagcAAGGCCTTGTCCTGGAGAAGGTCTTGCTATGAGTTGCGGTACAGGACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGAATTCACCTAAATCACCGCCGCGTTTGCCTGATGGGCAAATGGAGTGTTTCTTCGCCAGCTTGCCGAAATCGGccc                                                       <  2:74301/230‑1 (MQ=255)
                                                                                                                                                                                                                                                          aaCACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCt                                                                                                                                              <  5:1272012/149‑1 (MQ=255)
                                                                                                                                                                                                                                                          aaCACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCt                                                                                                                                              >  8:682445/1‑149 (MQ=255)
                                                                                                                                                                                                                                                          aaCACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGa                                                                                                                                  >  2:268209/1‑161 (MQ=255)
                                                                                                                                                                                                                                                           acacTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACt                                                                                                                                                                    >  7:308740/1‑126 (MQ=255)
                                                                                                                                                                                                                                                             acTCAATGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGAATTCACCTAAATCACCGCCGCGTTTGCCTGATGGGCAAATGGAGTGTTTCTTCGCCAGCTTGCCGAAATCGGCCCCGTTCTTAATCTGCTCGAGAAGATCCAGAGCCAGTTTCtcttct           <  1:109007/277‑1 (MQ=255)
                                                                                                                                                                                                                                                              cTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGAATTc                                                                                                                              <  4:268206/161‑1 (MQ=255)
                                                                                                                                                                                                                                                               tCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGACCCATCTGACCCTGGCGGAATTCACCTAAATCACCGCCGCGTTTGCCTGATGGGCAAATGGAGTGTTTCTTCGCCAGCTTGCCGAAATCGGCCCCGTTCTTACTCTGCTCGAGACGGTCCAGAGCCAGTTTCccttc            >  2:388864/1‑274 (MQ=255)
                                                                                                                                                                                                                                                               tCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGAATTCACCTAAATCACCGCCGCGTTTGCCTGATGGGCAAATGGAGTGTTTCTTCGCCAGCTTGCCGAAATCGGCCCCGTTCTTAATCTGCTCGAGAAGATCCAGAGCCAGTTTCtcttc            >  2:339332/1‑274 (MQ=255)
                                                                                                                                                                                                                                                                   ggCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACg                                                                                                                                                          >  2:715717/1‑128 (MQ=255)
                                                                                                                                                                                                                                                                   ggCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATc                                                                                                                                               <  5:917014/139‑1 (MQ=255)
                                                                                                                                                                                                                                                                   ggCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATc                                                                                                                                               >  6:917014/1‑139 (MQ=255)
                                                                                                                                                                                                                                                                     ccTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCggg                                                                                                                                                                                                        >  5:1330352/1‑80 (MQ=255)
                                                                                                                                                                                                                                                                       ttCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCgg                                                                                                                                                                                    >  8:45170/1‑98 (MQ=255)
                                                                                                                                                                                                                                                                       ttCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGaa                                                                                                                                 >  5:581464/1‑149 (MQ=255)
                                                                                                                                                                                                                                                                       ttCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCAGGCGGaa                                                                                                                                 >  5:1546860/1‑149 (MQ=255)
                                                                                                                                                                                                                                                                        tctcCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGAAt                                                                                                                                >  7:1556680/1‑149 (MQ=255)
                                                                                                                                                                                                                                                                          tcCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGAATTc                                                                                                                              >  7:822809/1‑149 (MQ=255)
                                                                                                                                                                                                                                                                            cTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGAATTCAc                                                                                                                            >  8:1373870/1‑149 (MQ=255)
                                                                                                                                                                                                                                                                            cTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGAATTCAc                                                                                                                            <  6:470483/149‑1 (MQ=255)
                                                                                                                                                                                                                                                                            cTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGAATTCAc                                                                                                                            >  7:1117857/1‑149 (MQ=255)
                                                                                                                                                                                                                                                                            cTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGAATTCAc                                                                                                                            >  6:744072/1‑149 (MQ=255)
                                                                                                                                                                                                                                                                             tGGAGAAGGCCCTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAGAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGAATTCAcc                                                                                                                           >  8:153162/1‑149 (MQ=255)
                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                              
ACGCTTGTGTGCCGTTGCTGAAACCGTTTATGGCAGAGCTGCAACCGGGCGACCTGGGTAAAGCTATTCCGGAAGGCGCGGTAGATAACGGGCAACTGCGTGATGTGAACGAAGCGATTCGCAGCCATGCGATTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGAATTCACCTAAATCACCGCCGCGTTTGCCTGATGGGCAAATGGAGTGTTTCTTCGCCAGCTTGCCGAAATCGGCCCCGTTCTTAATCTGCTCGAGAAGATCCAGAGCCAGTTTCTCTTCTTTTACAAGG  >  NC_000913/3959246‑3959784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: