Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 657,535 | C→A | 7.7% | intergenic (+34/+20) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 657,535 | 0 | C | A | 7.7% | 1034.0 / 54.9 | 308 | intergenic (+34/+20) | cspE/flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
Reads supporting (aligned to +/- strand): ref base C (151/130); new base A (10/14); total (162/146) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.91e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.76e-04 |
Only 100 of 308 total aligned reads displayed.
TCTATTTTTCATGTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGG‑TTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCACACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAAT > NC_000913/657265‑657812 | tCTATTTTTCATGTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGTTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAg > 2:409448/1‑273 (MQ=255) aTTTTTCATGTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACTCTTCTCTGCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGt < 1:119673/275‑1 (MQ=255) aCGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGGTGAGGCCGAAAAcctgtctctt > 1:99449/1‑269 (MQ=255) aGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCACAGGCCCTTCTGCTGCAAACGTCATCGCTCTG‑TAAGATCCGTCAGCAAGAATTCAAAACCCGCTTCATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTTAGGCCGAAAAC‑AGCCAGAATGCCAGTg > 1:280875/1‑279 (MQ=255) tCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGc > 4:644390/1‑275 (MQ=255) aaGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGcc < 2:654740/239‑1 (MQ=255) aGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTATTGTGCGGTTGAGGCCGAAAAC‑AGCCACAATGCCAGTGCGGGCATGGCAAAAg > 2:173725/1‑275 (MQ=255) ctctGCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGc < 5:459349/149‑1 (MQ=255) ctGCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCgg < 7:86873/149‑1 (MQ=255) tGCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCggg > 5:1075637/1‑149 (MQ=255) tGCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCggg > 7:15104/1‑149 (MQ=255) gCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCg < 5:1609347/146‑1 (MQ=255) aaTCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTGATTAAGCGGGttt < 7:1600098/149‑1 (MQ=255) tCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTTTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACaa > 2:62671/1‑274 (MQ=255) ccAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTGATTAAGCGGGttttga < 6:462114/149‑3 (MQ=255) cAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTGATTAAGCGGGttttgaa < 7:1103667/149‑4 (MQ=255) aGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTGATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGtttttttt < 7:975197/149‑1 (MQ=255) aCTTATGGTTTTAAAACTCTTGCTGAATTTCAGCGCGTAGCGTCCGAATTCACTAACGGTGCCAACGGGCCTTCTGATGCAAACGTAATCGCTCTT‑TAAGCTACGTCAGCTAGAATTCATAACCCTTTTAAGCAGCGGGCTTTTCTTGCTCTTTAGTCTGCGTTTGAGGCCGAAAAC‑ACCCAGAATGCCAGTCCGTGCATGGCACAAGACCCCAGAAGGTTGACGAAAACGTTAAGTAAGGTCCAGCCAACGCGGCCCCCTTATACCaacacaac > 4:465321/1‑269 (MQ=255) aCTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTgg < 8:392070/149‑1 (MQ=255) aaTGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCt < 5:1371849/149‑1 (MQ=255) tGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGACTGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACAAAAACACCACtt > 2:216898/1‑275 (MQ=255) ggTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCtt < 5:1301813/147‑1 (MQ=255) ggTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCtt < 5:1645115/147‑1 (MQ=255) ggTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTa < 5:206838/149‑1 (MQ=255) gTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAg < 5:1239881/149‑1 (MQ=255) tttAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAgtg > 6:36867/1‑149 (MQ=255) ttAAAACTCTTGCTGAAGGTCATCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACg < 1:191067/221‑1 (MQ=255) aCTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAgt > 5:1397103/1‑142 (MQ=255) aCTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAgt < 6:1397103/142‑1 (MQ=255) ctTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGCGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCACAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGa < 8:1375851/149‑1 (MQ=255) tGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAgg < 7:1250753/149‑1 (MQ=255) gCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGc < 5:154498/149‑1 (MQ=255) tGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTGATTAAGCGGGttt < 7:574681/119‑1 (MQ=255) tGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTGATTAAGCGGGttt > 8:574681/1‑119 (MQ=255) gAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGa > 6:1550104/1‑149 (MQ=255) gAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGa > 8:345586/1‑149 (MQ=255) cAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCCTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑a < 5:742409/148‑1 (MQ=255) cgcgTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑a < 4:101466/145‑1 (MQ=255) gTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGaa < 6:1000932/149‑1 (MQ=255) ttCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAg > 6:1617739/1‑149 (MQ=255) ttCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTGATTAAGCGGGttttgaa > 8:1467698/1‑101 (MQ=39) tCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGt < 6:1124284/149‑1 (MQ=255) tCGAAATCACTAACGGGGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGG‑TTGTTAGACCGCcaca < 2:390121/274‑1 (MQ=255) atcccaaaCTGTCCCAAAGTCCCTTCTGCTGCANGGTTACTCGCTCTG‑TAATATACGTCNGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCNAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGG‑TTGTTAGACCGCCACAAAATCCggtg < 3:180740/273‑1 (MQ=255) tCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTc > 6:1280686/1‑149 (MQ=255) cACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGG‑TTGTTAGACCGCCACAAAATCCg < 2:343408/274‑1 (MQ=255) cACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTAAGGCCGAAAAC‑AGCCCGAATGCCAGTTCGGTCATGGCAAAAGAACCCAGAAGTTTGACGAAAACGTTAAGTAATGCCCAGCCAAAGCGGCCATCTTGTAACAAAAACACCAATTCTGCCGAAAATTTTGCTAAGG‑TTTGTAGACCGAAACAACATCCgg > 4:578273/1‑275 (MQ=255) aCTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCAt < 7:473581/149‑1 (MQ=255) aCTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGATTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCAt > 8:1103517/1‑149 (MQ=255) cTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCCAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCAAGTGCGGTCATGGCAAAAGACCCCAGCAGGTTGACGAAAACGTTCTGTAATTCCAAGCCAAAGCGGCCCTCTTTTAACAAAAACACCACTTCTACCGAAACTGTTGNNNAGG‑TGGTTAGACCACCCAAAAAACCtgtggtt > 3:266243/1‑277 (MQ=255) tAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATgg < 6:298303/149‑1 (MQ=255) aaCGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATg < 2:277951/147‑1 (MQ=255) aCGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCa > 6:437242/1‑149 (MQ=255) ccAAAGGCCGTTCTGCTGGAAACG‑AATTGTACTGTTAACATACGGAATCAAGAATTCAAAAACGGGTGAAGGAGCGGGTTTTTTTTGGTCTTTAGTGTGGCGTAGAGGCCGAAAAA‑AGCCAGAAGGCAAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGAGGAAAACGTTCAGCAATGCCCAGCCAAAGCGGCCCTCTTGTAACAAAAAAACCACTTCTGCCGAAAATGTTGAGAAGG‑TTGTTAGACCGCCACAAAATCCGGTGGTGATTAAt < 4:296738/275‑1 (MQ=255) ccAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGa < 1:221910/155‑1 (MQ=255) ccAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCANGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTTTACCAAAAACACCACTTNAGCCGAAAATGTTTAGAAGGTTTGGNAAACC‑CCAAAAAACCAGGTGGTTATTAATACt > 3:158485/1‑278 (MQ=255) cAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTGATTAAGCGGGtt < 5:461460/79‑1 (MQ=38) aaaGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGAccc > 8:673863/1‑149 (MQ=255) aaGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGAcccc > 7:645832/1‑149 (MQ=255) aaGGCCCTTCTGCTGCAAACGTAATCACTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGAcccc > 6:1208830/1‑149 (MQ=255) aGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGGTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGtt < 4:400163/168‑1 (MQ=255) gCCCTTCTGCTGACAACGTAAGCCGTCTG‑TAAAGAACGGAAGAATGAGTTCAAAACCCGCGTAATCAGCGGGTTTTATTTGGTGTTTAGTGGGCGGTTGAGGCCGAAAAC‑AGCGAGAATGCCAGTGCGGTCATGGGAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAGGCGGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGG‑TTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTc < 4:192648/275‑1 (MQ=255) ccTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCaaaa < 6:671358/138‑1 (MQ=255) ttCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACg < 1:17367/160‑1 (MQ=255) tCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGtt < 5:1141945/149‑1 (MQ=255) gctgcAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGAc < 8:263516/149‑1 (MQ=255) gcAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTTCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACAAAAACACCACTTCTGCCGCAAATTTTGAGAAGG‑TTGTTAGACCGCCACAAAATCCGGTGGGGCTTAATTCTTTCAacacctgtct > 4:256098/1‑269 (MQ=255) aaaCGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGaaaa > 6:1305655/1‑149 (MQ=255) aaCGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAAc < 7:244006/149‑1 (MQ=255) aCGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACg > 6:121447/1‑149 (MQ=255) gTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGtt > 5:511850/1‑149 (MQ=255) gTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGtt < 5:334768/149‑1 (MQ=255) aTCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAg > 5:542460/1‑149 (MQ=255) ctctG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTc > 7:359346/1‑107 (MQ=255) tG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGcc > 5:396887/1‑149 (MQ=255) tAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGtt < 7:1002012/137‑1 (MQ=255) tAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCa < 8:774274/149‑1 (MQ=255) tAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCa > 5:800189/1‑149 (MQ=255) aTACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCa < 2:520276/99‑1 (MQ=255) gTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCa > 4:731037/1‑100 (MQ=255) gTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGc < 5:842121/149‑1 (MQ=255) cAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGG‑TTGTTAGAACGCCACAAAATCCGGTGGTGATTAATACTTTCCCCACTGGATCAATGTTCGTCATCCTGCTGCACCATGCg > 2:30204/1‑275 (MQ=255) gCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAg < 2:731042/100‑1 (MQ=255) gCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGcc < 5:930219/149‑1 (MQ=255) aaaaaaaaCCCGCTGATTAAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGc > 6:756061/5‑133 (MQ=255) ttCAAAACCCGCTTAATCAGCGGGTTTTTTTTGTTCTTTATTGTGCGGTTG‑GGCCCAAAACAAGCAAAATTGCAATTGGGGTAAGGCAAAAAGACCCCGGAAGGTTAAGGAAAAGTTTAAGAATTCCCCAGCAAAAGCGCCcttcttta > 8:1230479/1‑147 (MQ=255) ttCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGTCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCgtgt > 6:848627/1‑149 (MQ=255) cAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTaa < 6:460456/149‑1 (MQ=255) aaaaCCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCtt > 8:1622756/1‑144 (MQ=255) aaaaCCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAAc > 7:1456586/1‑149 (MQ=255) aaaaCCCGCTTAATAGGCGGGGTTTTTTTGGTTTTTAGGGTGGGGTGGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGAAAAAGACCCGAGAAGGTTGACGAAAACGTTCAGTAATGCACAGCCAAAGCGGCCCTCTTGTAACAAAAACACCACTTCGGCCGAAAATGTTGAGAAGG‑TTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCACACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAAtcctattcct < 4:570061/275‑1 (MQ=255) aaCCCGCTGATTAAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACaa > 5:645494/1‑149 (MQ=255) aaCCCGCTGATTAAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACaa > 7:789736/1‑149 (MQ=255) ccGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACaaaaa > 6:1515332/1‑149 (MQ=255) gCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGtt > 7:67515/1‑40 (MQ=255) gCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGcc > 4:330908/1‑118 (MQ=255) cTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGAc > 6:1657745/1‑98 (MQ=255) tAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGCCCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACAAAAAcacca < 7:1361766/149‑1 (MQ=255) tAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGG‑TTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCACACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATg < 2:576546/275‑1 (MQ=255) aTCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATTCCCAGCCAAAGCGGCCCTCTTGTAACAAAAACACAACt > 8:1273515/1‑149 (MQ=255) | TCTATTTTTCATGTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTAATCGCTCTG‑TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGGGTTTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAC‑AGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGG‑TTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCACACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAAT > NC_000913/657265‑657812 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |