| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 183652 = | 166 (0.900) | 12 (0.070) | 8/236 | NT | 7.5% | intergenic (+32/+57) | cdaR/yaeH | carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein |
| ? | NC_000913 | 183685 = | 145 (0.860) | intergenic (+65/+24) | cdaR/yaeH | carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein | |||||
TTAAGCGTAAGATCCTCGACGACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGGGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/183809‑183652‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggggaatgCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGCTTAAGATCAACTTCGCTGCGGTCA > NC_000913/183685‑183829 TTAAGCGTAAGATCCTCGACGACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCTTTCCCCTCTACCCTTCGGGCTG > 4:51103/1‑149TTAAGCGTAAGATCCTCGACGACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTG > 4:1243573/1‑149TTAAGCGTAAGATCCTCGACGACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTG > 4:794501/1‑149 TAAGCGTAAGATCCTCGACGACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGA > 3:1561878/1‑149 TAAGCGTAAGATCCTCGACGACTTACGTCACCTGGAGTCAGTCGTAA‑CAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAG > 2:1717348/1‑149 AAGCGTAAGATCCTCGACGACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATCGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAG < 4:1347985/149‑1 GCGTAAGATCCTCGACGACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGG < 2:1437681/149‑1 GCGTAAGATCCTCGACGACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGG < 3:663912/149‑1 GCGTAAGATCCTCGACGACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGG < 2:132066/149‑1 CGTAAGATCCTCGACGACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGGG < 3:152290/149‑1 TAAGATCCTCGACGACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGGGAA > 3:1558682/1‑149 TAAGATCCTCGACGACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGGGAA < 2:1346505/149‑1 AAGATCCTCGACGACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGGGAAT < 1:1684221/149‑1 GACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAG < 1:727324/131‑1 GACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAG > 2:727324/1‑131 CGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGG < 4:1095734/91‑1 CGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGG > 3:1095734/1‑91 AGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGG < 4:235433/90‑1 AGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGG > 3:235433/1‑90 AATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGGGAAT < 2:410165/61‑1 AATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGGGAAT > 1:410165/1‑61 CGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGG < 2:841905/49‑1 CGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGG > 1:841905/1‑49 ATTCCCCTCTACCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTT > 3:580566/1‑149 CCCCTCTACCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTGGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACTTAAGTCGTCGAGGATCTTACG > 1:1062720/1‑149 CCCCTCTACCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACG > 4:167783/1‑149 CCCCTCTACCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACG > 1:841649/1‑149 CCCCTCTACCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACG > 2:260423/1‑149 CCCTCTACCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTT < 3:1429803/84‑1 CCCTCTACCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTT > 4:1429803/1‑84 CTCTACCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTTTTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGCTT > 1:349609/1‑149 CTCTACCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTC > 1:849585/1‑71 CTCTACCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTC < 2:849585/71‑1 CCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGCTTAAGATC < 1:260423/149‑1 TTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGCTTAAGATCAA < 3:167783/149‑1 GAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGCTTAAGATCAACTTCGCTG > 2:1096379/1‑149 AGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGCTTAAGATCAACTTCGCTGC < 4:990691/149‑1 AGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGCTTAAGATCAACTTCGCTGC < 2:1395145/149‑1 GGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGCTTAAGATCAACTTCGCTGCGG > 4:1339756/1‑149 GGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGCTTAAGATCAACTTCGCTGCGG > 2:348122/1‑149 GGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACCACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGCTTAAGATCAACTTCGCTGCGG > 1:1226923/1‑149 GAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGCTTAAGATCAACTTCGCTGCGGTC > 1:927189/1‑149 AATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTCATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGCTTAAGATCAACTTCGCTGCGGTCA > 3:1445089/1‑149 TTAAGCGTAAGATCCTCGACGACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGGGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/183809‑183652‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggggaatgCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGCTTAAGATCAACTTCGCTGCGGTCA > NC_000913/183685‑183829 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |