New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	267777 =	184 (1.000)	9 (0.050)	5/244	NT	5.1%	coding (229/822 nt)	yafZ	CP4‑6 prophage; conserved protein
	?	NC_000913	267800 =	162 (0.930)					coding (206/822 nt)	yafZ	CP4‑6 prophage; conserved protein

TTTCGCGTAGTGCCCAGTGTATTCAGTGAGGACAAACACGAGTCCCGTAGTGAGCGTTATACCTATATACCCACCATCTCCCTGCTCGACAGCCTACAGCGAGAAGGCTTCCAGCCATTCTTTGCCTGTCAGACCCGCGTGCGTGACCCGGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/267930‑267777 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggtcTGACAGGCAAAGAATGGCTGGAAGCCTTCTCGCTGTAGGCTGTCGAGCAGGGAGATGGTGGGTATATAGGTATAACGCTCACTACGGGACTCGTGTTTGTCCTCACTGAATACACTGGGCACTACGCGAAACAGCTCTTCACGGGTT  >  NC_000913/267800‑267946                                                                                                                                                                                                                                                                                                               TTTCGCGTAGTGCCCAGTGTATTCAGTGAGGACAAACACGAGTCCCGTAGTGAGCGTTATACCTATATACCCACCATCTCCCTGCTCGACAGCCTACAGCGAGAAGGCTTCCAGCCATTCTTTGCCTGTCAGACCCGCGTGCGTGACCC                                                                                                                                                          >  1:251208/1‑149   TCGCGTAGTGCCCAGTGTATTCAGTGAGGACAAACATGAGTCCCGTAGTGAGCGTTATACCTATATTCCCACCATTTCACTGCTCGACAGCCTACAGCGAGAAGGCTTCCAGCCATTCTTTGCCTGTCAGACCCGCGTGCGTGACCCGG                                                                                                                                                        <  1:573553/149‑1   TCGCGTAGTGCCCAGTGTATTCAGTGAGGACAAACACGAGTCCCGTAGTGAGCGTTATACCTATATACCCACCATCTCCCTGCTCGACAGCCTACAGCGAGAAGGCTTCCAGCCATTCTTTGCCTGTCAGACCCGCGTGCGTGACCCGG                                                                                                                                                        <  1:962489/149‑1   TCGCGTAGTGCCCAGTGTATTCAGTGAGGACAAACACGAGTCCCGTAGTGAGCGTTATACCTATATACCCACCATCTCCCTGCTCGACAGCCTACAGCGAGAAGGCTTCCAGCCATTCTTTGCCTGTCAGACCCGCGTGCGTGACCCGG                                                                                                                                                        <  3:846937/149‑1   TCGCGTAGTGCCCAGTGTATTCAGTGAGGACAAACACGAGTCCCGTAGTGAGCGTTATACCTATATACCCACCATCTCCCTGCTCGACAGCCTACAGCGAGAAGGCTTCCAGCCATTCTTTGCCTGTCAGACCCGCGTGCGTGACCCGG                                                                                                                                                        <  3:373647/149‑1    CGCGTAGTGCCCAGTGTATTCAGTGAGGACAAACACGAGTCCCGTAGTGAGCGTTATACCTATATACCCACCATCTCCCTGCTCGACAGCCTACAGCGAGAAGGCTTCCAGCCATTCTTTGCCTGTCAGACCCGCGTGCGTGACCCGGG                                                                                                                                                       <  4:1138193/149‑1    CGCGTAGTGCCCAGTGTATTCAGTGAGGACAAACACGAGTCCCGTAGTGAGCGTTATACCTATATACCCACCATCTCCCTGCTCGACAGCCTACAGCGAGAAGGCTTCCAGCCATTCTTTGCCTGTCAGACCCGCGTGCGTGACCCGGG                                                                                                                                                       <  4:244996/149‑1     GCGTAGTGCCCAGTGTATTCAGTGAGGACAAACACGAGTCCCGTAGTGAGCGTTATACCTATATACCCACCATCTCCCTGCTCGACAGCCTACAGCGAGAAGGCTTCCAGCCATTCTTTGCCTGTCAGACCCGCGTGCGTGACCCGGGT                                                                                                                                                      >  2:1277255/1‑149     GCGTAGTGCCCAGTGTATTCAGTGAGGACAAACACGAGTCCCGTAGTGAGCGTTATACCTATATACCCACCATCTCCCTGCTCGACAGCCTACAGCGAGAAGGCTTCCAGCCATTCTTTGCCTGTCAGACCCGCGTGCGTGACCCGGGT                                                                                                                                                      >  4:1355321/1‑149      CGTAGTGCCCAGTGTATTCAGTGAGGACAAACACGAGTCCCGTAGTGAGCGTTATACCTATATACCCACCATCTCCCTGCTCGACAGCCTACAGCGAGAAGGCTTCCAGCCATTCTTTGCCTGTCAGACCCGCGTGCGTGACCCGGGTC                                                                                                                                                     <  1:765923/149‑1      CGTAGTGCCCAGTGTATTCAGTGAGGACAAACACGAGTCCCGTAGTGAGCGTTATACCTATATACCCACCATCTCCCTGCTCGACAGCCTACAGCGAGAAGGCTTCCAGCCATTCTTTGCCTGTCAGACCCGCGTGCGTGACCCGGGTC                                                                                                                                                     <  2:1404200/149‑1      CGTAGTGCCCAGTGTATTCAGTGAGGACAAACACGAGTCCCGTAGTGAGCGTTATACCTATATACCCACCATCTCCCTGCTCGACAGCCTACAGCGAGAAGGCTTCCAGCCATTCTTTGCCTGTCAGACCCGCGTGCGTGACCCGGGTC                                                                                                                                                     <  3:37834/149‑1                                                                                                                                   AGACCCGCGTGCGTGACCCGGGTCTGACAGGCAAAGAATGGCTGGAAGCCTTCTCGCTGTAGGCTGTCGAGCAGGGAGATGGTGGGTATATAGGTATAACGCTCACTACGGGACTCGTGTTTGTCCTCACTGAATACACTGGGCACTAC                        >  4:902121/1‑149                                                                                                                                   AGACCCGCGTGCGTGACCCGGGTCTGACAGGCAAAGAATGGCTGGAAGCCTTCTCGCTGTAGGCTGTCGAGCAGGGAGATGGTG                                                                                         >  1:559117/1‑84                                                                                                                                   AGACCCGCGTGCGTGACCCGGGTCTGACAGGCAAAGAATGGCTGGAAGCCTTCTCGCTGTAGGCTGTCGAGCAGGGAGATGGTG                                                                                         <  2:559117/84‑1                                                                                                                                    GACCCGCGTGCGTGACCCGGGTCTGACAGGCAAAGAATGGCTGGAAGCCTTCTCGCTGTAGGCTGTCGAGCAGGGAGATGGTGGGTATATAGGTATAACGCTCACTACGGGACTCGTGTTTGTCCTCACTGAATACACTGGGCACTACG                       >  4:1673815/1‑149                                                                                                                                    GACCCGCGTGCGTGACCCGGGTCTGACAGGCAAAGAATGGCTGGAAGCCTTCTCGCTGTAGGCTGTCGAGCAGGGAGATGGTGGGTATATAGGTATAACGCTCACTACGGGACTCGTGTTT                                                   >  2:705002/1‑121                                                                                                                                    GACCCGCGTGCGTGACCCGGGTCTGACAGGCAAAGAATGGCTGGAAGCCTTCTCGCTGTAGGCTGTCGAGCAGGGAGATGGTGGGTATATAGGTATAACGCTCACTACGGGACTCGTGTTT                                                   <  1:705002/121‑1                                                                                                                                    GACCCGCGTGCGTGACCCGGGTCTGACAGGCAAAGAATGGCTGGAAGCCTTCTCGCTGTAGGCTGTCGAGCAGGGAGATGGTGG                                                                                        >  3:1193606/1‑84                                                                                                                                    GACCCGCGTGCGTGACCCGGGTCTGACAGGCAAAGAATGGCTGGAAGCCTTCTCGCTGTAGGCTGTCGAGCAGGGAGATGGTGG                                                                                        <  4:1193606/84‑1                                                                                                                                    GACCCGCGTGCGTGACCCGGGTCTGACAGGCAAAGAATGGCTGGAAGCCTTCTCGCTGTAGGCTGTCGAGCAGGGAGATGGTGAGTATATAGGTATAACGCTCACTACGGGACTCGTGTTTGTCCTCACTGAATACACTGGGCACTACG                       >  4:957518/1‑149                                                                                                                                                      GGGTCTGACAGGCAAAGAATGGCTGGAAGCCTTCTCGCTGTAGGCTGTCGAGCAGGGAGATGGTGGGTATATAGGTATAACGCTCACTACGGGACTCGTGTTTGTCCTCACTGAATACACTGGGCACTACGCGAAACAGCTCTTCACGG     <  2:1309126/149‑1                                                                                                                                                      GGGTCTGACAGGCAAAGAATGGCTGGAAGCCTTCTCGCTGTAGGCTGTCGAGCAGGGAGATGGTGGGTATATAGGTATAACGCTCACTACGGGACTCGTGTTTGTCCTCACTGAATACACTGGGCACTACGCGAAACAGCTCTTCACGG     <  1:7748/149‑1                                                                                                                                                      GGGTCTGACAGGCAAAGAATGGCTGGAAGCCTTCTCGCTGTAGGCTGTCGAGCAGGGAGATGGTGGGTATATAGGTATAACGCTCACTACGGGACTCGTGTTTGTCCTCACTGAATACACTGGGCACTACGCGAAACAGCTCTTCACGG     <  1:1646149/149‑1                                                                                                                                                        GTCTGACAGGCAAAGAATGGCTGGAAGCCTTCTCGCTGTAGGCTGTCGAGCAGGGAGATGGTGGGTATATAGGTATAACGCTCACTACGGGACTCGTGTTTGTCCTCACTGAATACACTGGGCACTACGCGAAACAGCTCTTCACGGGT   <  3:767824/149‑1                                                                                                                                                         TCTGACAGGCAAAGAATGGCTGGAAGCCTTCTCGCTGTAGGCTGTCGAGCAGGGAGATGGTGGGTATATAGGTATAACGCTCACTACGGGACTCGTGTTTGTCCTCACTGAATACACTGGGCACTACGCGAAACAGCTCTTCACGGGTT  <  1:1263796/149‑1                                                                                                                                                                                                                                                                                                               TTTCGCGTAGTGCCCAGTGTATTCAGTGAGGACAAACACGAGTCCCGTAGTGAGCGTTATACCTATATACCCACCATCTCCCTGCTCGACAGCCTACAGCGAGAAGGCTTCCAGCCATTCTTTGCCTGTCAGACCCGCGTGCGTGACCCGGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/267930‑267777 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggtcTGACAGGCAAAGAATGGCTGGAAGCCTTCTCGCTGTAGGCTGTCGAGCAGGGAGATGGTGGGTATATAGGTATAACGCTCACTACGGGACTCGTGTTTGTCCTCACTGAATACACTGGGCACTACGCGAAACAGCTCTTCACGGGTT  >  NC_000913/267800‑267946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.