New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4263218167 (0.910)11 (0.060) 9/240 NT 6.3% intergenic (+136/+30) pspG/qorA phage shock protein G/quinone oxidoreductase, NADPH‑dependent
?NC_000913 = 4263241 171 (0.990)intergenic (+159/+7) pspG/qorA phage shock protein G/quinone oxidoreductase, NADPH‑dependent

GACCGCTGGCGTTACTAAGGGATTGTGCGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4263065‑4263218
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagaaaTAGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTTTTATAGTTCGGCTGTATGTAGGGTACAGCACGATGAATCTGTTAGAGGCGCAATAGTGACAGATTTGATTATCAATTCCTATTTTGTTCTAAGGATAAAACCTTAGGTTGTGATCATC  <  NC_000913/4263241‑4263094
                                                                                                                                                                                                                                                                                                                
GACCGCTGGCGTTACTAAGGGATTGTGCGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAA                                                                                                                                                             >  2:169683/1‑149
GACCGCTGGCGTTACTAAGGGATTGTGCGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAA                                                                                                                                                             >  1:58189/1‑149
 ACCGCTGGCGTTACTAAGGGATTGTGCGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAA                                                                                                                                                            <  2:1176184/149‑1
  CCGCTGGCGTTACTAAGGGATTGTGCGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAG                                                                                                                                                           >  1:550772/1‑149
    GCTGGCGTTACTAAGGGATTGTGCGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAA                                                                                                                                                         >  3:1433766/1‑149
     CTGGCGTTACTAAGGGATTGTGCGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAA                                                                                                                                                        <  3:1132623/149‑1
     CTGGCGTTACTAAGGGATTGTGCGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAA                                                                                                                                                        <  3:81069/149‑1
     CTGGCGTTACTAAGGGATTGTGCGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAA                                                                                                                                                        <  4:1128723/149‑1
     CTGGCGTTACTAAGGGATTGTGCGGATGATCACAACATAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAA                                                                                                                                                        <  3:1605525/149‑1
                           CGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCCCTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAA‑‑AGGGCTTCCACCTGGGAAGCCC‑‑T                                                                                                                              <  2:81422/149‑1
                                GATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAATAGGGCTTCCACCTGGGAAGCCC‑‑TTTC                                                                                                                           <  3:1372050/149‑1
                                 ATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAA‑‑AGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTT                                                                                                                        <  3:466139/149‑1
                                   CACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAATAGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTT                                                                                                                        >  4:1294699/1‑149
                                    ACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAATAGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTTT                                                                                                                       <  3:1301417/149‑1
                                     CAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAATAGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTTTT                                                                                                                      <  3:1294699/149‑1
                                                                                        TCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAATAGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTTTT                                                                                                                      >  1:253845/1‑98
                                                                                        TCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAATAGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTTTT                                                                                                                      <  2:253845/98‑1
                                                                                                        AACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAG                                                                                                                                                           <  1:716528/47‑1
                                                                                                        AACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAG                                                                                                                                                           >  2:716528/1‑47
                                                                                                         ACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAA‑‑AGGGCTTCCACCTGGGAAGCCC‑‑T                                                                                                                              <  1:715072/71‑1
                                                                                                         ACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAA‑‑AGGGCTTCCACCTGGGAAGCCC‑‑T                                                                                                                              >  2:715072/1‑71
                                                                                                                                   TACAGCCGAACTATAAAAAGAA‑‑AGGGCTTCCCAGGTGGAAGCCCTATTTCTTTTTATAGTTCGGCTGTATGTAGGGTACAGCACGATGAATCTGTTAGAGGCGCAATAGTGACAGATTTGATTATCAATTCCTATTTTGTTCTAAGGAT                        >  1:599349/1‑149
                                                                                                                                                  AAAAGAAATAGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTTTTATAGTTCGGCTGTATGTAGGGTACAGCACGATGAATCTGTTAGAGGCGCAATAGTGACAGATTTGATTATCAATTCCTATTTTGTTCTAAGGATAAAACCTTAGGTTGT         >  4:1300734/1‑149
                                                                                                                                                   AAAGAAATAGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTTTTATAGTTCGGCTGTATGTAGGGTACAGCACGATGAATCTGTTAGAGGCGCAATAGTGACAGATTTGATTATCAATTCCTATTTTGTTCTAAGGATAAAACCTTAGGTTGTG        >  3:1640903/1‑149
                                                                                                                                                   AAAGAAATAGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTTTTATAGTTCGGCTGTATGTAGGGTACAGCACGATGAATCTGTTAGAGGCGCAATAGTGACAGATTTGATTATCAATTCCTATTTTGTTCTAAGGATAAAACCTTAGGTTGTG        >  4:1433766/1‑149
                                                                                                                                                   AAAGAAATAGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTTTTATAGTTCGGCTGTATGTAGGGTACAGCACGATGAATCTGTTAGAGGCGCAATAGTGACAGATTTGATTATCAATTCCTATTTTGTTCTAAGGATAAAACCTTAGGTT           >  2:1078272/1‑146
                                                                                                                                                   AAAGAAATAGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTTTTATAGTTCGGCTGTATGTAGGGTACAGCACGATGAATCTGTTAGAGGCGCAATAGTGACAGATTTGATTATCAATTCCTATTTTGTTCTAAGGATAAAACCTTAGGTT           <  1:1078272/146‑1
                                                                                                                                                   AAAGAAATAGGGCTGCCACCTGGGAAGCCC‑‑TTTCTTTTTATAGTTCGGCTGTATGTAGGGTACAGCACGATGAATCTGTTAGAGGCGCAATAGTGACAGATTTGATTATCAATTCCTATTTTGTTCTAAGGATAAAACCTTAGGTTGTG        >  1:1290880/1‑149
                                                                                                                                                    AAGAAATAGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTTTTATAGTTCGGCTGTATGTAGGGTACAGCACGATGAATCTGTTAGAGGCGCAATAGTGACAGATTTGATTATCAATTCCTATTTTGTTCTAAGGATAAAACCTTAGGTTGTGA       <  2:531771/149‑1
                                                                                                                                                    AAGAAATAGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTTTTATAGTTCGGCTGTATGTAGGGTACAGCACGATGAATCTGTTAGAGGCGCAATAGTGACAGATTTGATTATCAATTCCTATTTTGTTCTAAGGATAAAACCTTAGGTTGTGA       <  2:1290880/149‑1
                                                                                                                                                    AAGAAATAGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTTTTATAGTTCGGCTGTATGTAGGGTACAGCACGATGAATCTGTTAGAGGCGCAATAGTGACAGATTTGATTATCAATTCCTATTTTGTTCTAAGGATAAAACCTTAGGTTGTGA       <  1:455508/149‑1
                                                                                                                                                    AAGAAATAGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTTTTATAGTTCGGCTGTATGTAGGGTACAGCACGATGAATCTGTTAGAGGCGCAATAGTGACAGATTTGATTATCAATTCCTATTTTGTTCTAAGGATAAAACCTTAGGTTGTGA       >  1:173138/1‑149
                                                                                                                                                     AGAAATAGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTTTTATAGTTCGGCTGTATGTAGGGTACAGCACGATGAATCTGTTAGAGGCGCAATAGTGACAGATTTGATTATCAATTCCTATTTTGTTCTAAGGATAAAACCTTAGGTTGTGAT      <  3:1291675/149‑1
                                                                                                                                                     AGAAATAGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTTTTATAGTTCGGCTGTATGTAGGGTACAGCACGATGAATCTGTTAGAGGCGCAATAGTGACAGATTTGATTATCAATTCCTATTTTGTTCTAAGGATAAAACCTTAGGTTGTG        <  3:193924/147‑1
                                                                                                                                                     AGAAATAGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTTTTATAGTTCGGCTGTATGTAGGGTACAGCACGATGAATCTGTTAGAGGCGCAATAGTGACAGATTTGATTATCAATTCCTATTTTGTTCTAAGGATAAAACCTTAGGTTGTG        >  4:193924/1‑147
                                                                                                                                                     AGAAATAGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTTTTATAGTTCGGCTGTATGTAGGGTACAGCACGATGAATCTGTTAGAGGCGCAATAGTGACAGATTTGATTATCAATTCCTATTTTGTTCTAACGATAAAACCTTAGGTTGTGAT      >  4:273047/1‑149
                                                                                                                                                      GAAATAGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTTTTATAGTTCGGCTGTATGTAGGGTACAGCACGATGAATCTGTTAGAGGCGCAATAGTGACAGATTTGATTATCAATTCCTATTTTGTTCTAAGGATAAAACCTTAGGTTGTGATC     <  1:1624480/149‑1
                                                                                                                                                         ATAGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTTTTATAGTTCGGCTGTATGTAGGGTACAGCACGATGAATCTGTTAGAGGCGCAATAGTGACAGATTTGATTATCAATTCCTATTTTGTTCTAAGGATAAAACCTTAGGTTGTGATCATC  <  4:449024/149‑1
                                                                                                                                                                                                                                                                                                                
GACCGCTGGCGTTACTAAGGGATTGTGCGGATGATCACAACCTAAGGTTTTATCCTTAGAACAAAATAGGAATTGATAATCAAATCTGTCACTATTGCGCCTCTAACAGATTCATCGTGCTGTACCCTACATACAGCCGAACTATAAAAAGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4263065‑4263218
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagaaaTAGGGCTTCCACCTGGGAAGCCC‑‑TTTCTTTTTATAGTTCGGCTGTATGTAGGGTACAGCACGATGAATCTGTTAGAGGCGCAATAGTGACAGATTTGATTATCAATTCCTATTTTGTTCTAAGGATAAAACCTTAGGTTGTGATCATC  <  NC_000913/4263241‑4263094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.