New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1279366 =130 (0.710)8 (0.050) 8/246 NT 5.6% intergenic (+18/‑498) narK/narG nitrate/nitrite transporter/nitrate reductase 1, alpha subunit
?NC_000913 1279464 = 145 (0.820)intergenic (+116/‑400) narK/narG nitrate/nitrite transporter/nitrate reductase 1, alpha subunit

Only 100 of 152 total aligned reads displayed.

TCCCGAAAGCGTTTGGTAGCTCGCTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCT  >  NC_000913/1279218‑1279514
                                                                                                                                                     |                                                                                                                                                    
tCCCGAAAGCGTTTGGTAGCTCGCTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACt                                                                                                                                                      >  4:1653641/1‑149 (MQ=255)
  ccGAAAGCGTTTGGTAGCTCGCTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTc                                                                                                                                                    >  1:1112974/1‑149 (MQ=255)
  ccGAAAGCGTTTGGTAGCTCGCTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTc                                                                                                                                                    >  2:216941/1‑149 (MQ=255)
  ccGAAAGCGTTTGGTAGCTCGCTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTc                                                                                                                                                    <  3:115602/149‑1 (MQ=255)
    ttccccatgggtaacatattaatggctcttaatgaaatccggcgaaataaaccatataacattagtatgttgtaactaaatgacgcataaaaaaagcgcgacatcatgccgcgcaaaggataatcaaatattttactctatataaTTCg                                                                                                                                                   >  4:1658570‑M1/146‑149 (MQ=255)
         cGTTTGGTAGCTCGCTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTAc                                                                                                                                             <  4:1018351/149‑1 (MQ=255)
         cGTTTGGTAGCTCGCTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCCGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTAc                                                                                                                                             <  2:784717/149‑1 (MQ=255)
          gTTTGGTAGCTCGCTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACa                                                                                                                                            >  3:911129/1‑149 (MQ=255)
           tgggtaacatattaatggctcttaatgaaatccggcgaaataaaccatataacattagtatgttgtaactaaatgacgcataaaaaaagcgcgacatcatgccgcgcaaaggataatcaaatattttactctatataaTTCGGGTTACa                                                                                                                                            >  4:844737‑M1/139‑149 (MQ=255)
               gTAGCTCGCTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGtgc                                                                                                                                       <  1:1005990/149‑1 (MQ=255)
                tAGCTCGCTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGtgct                                                                                                                                      >  4:58964/1‑149 (MQ=255)
                 aGCTCGCTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGtgctg                                                                                                                                     >  2:1676025/1‑149 (MQ=255)
                  gCTCGCTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGtgctgc                                                                                                                                    >  4:748106/1‑149 (MQ=255)
                      gCTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTgctgcggct                                                                                                                                >  2:1221403/1‑149 (MQ=255)
                       cTGGCATTAACGGGTTCGTCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTgctgcggctg                                                                                                                               <  4:761598/149‑1 (MQ=255)
                           cATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGtt                                                                                                                           <  3:865347/149‑1 (MQ=255)
                            aTTAACGGGTTGGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGttc                                                                                                                          >  3:1353098/1‑149 (MQ=255)
                            aTTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGttc                                                                                                                          >  4:41554/1‑149 (MQ=255)
                            aTTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGttc                                                                                                                          <  2:1077524/149‑1 (MQ=255)
                            aTTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGt                                                                                                                            >  1:781675/1‑147 (MQ=255)
                               aaCGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGttcatt                                                                                                                       <  1:987012/149‑1 (MQ=255)
                                aCGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGttcattc                                                                                                                      >  1:589884/1‑149 (MQ=255)
                                     ttCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCAcccc                                                                                                                 >  3:1036089/1‑149 (MQ=255)
                                     ttCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCAcccc                                                                                                                 >  2:748121/1‑149 (MQ=255)
                                        gCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGt                                                                                                                                                <  1:710881/115‑1 (MQ=255)
                                               ggCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATTTGGTCGGCATT‑CTAAAAAATAAACCGTTGCTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCacttac                                                                                                       <  3:1050228/149‑1 (MQ=255)
                                                       gAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTaa                                                                                               >  4:597045/1‑149 (MQ=255)
                                                           gTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGTGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTc                                                                                           >  3:38796/1‑149 (MQ=255)
                                                             aTTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCt                                                                                         <  3:623854/149‑1 (MQ=255)
                                                             aTTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCt                                                                                         <  1:1243173/149‑1 (MQ=255)
                                                             aTTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCt                                                                                         <  1:352496/149‑1 (MQ=255)
                                                             aTTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGCGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCt                                                                                         <  2:884278/149‑1 (MQ=255)
                                                              tttttGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTg                                                                                        <  3:753400/149‑1 (MQ=255)
                                                               ttttGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTgg                                                                                       <  1:1325697/149‑1 (MQ=255)
                                                                  tGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGat                                                                                    <  1:217072/149‑1 (MQ=255)
                                                                     ttttCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCgg                                                                                                                                                  >  3:574101/1‑84 (MQ=255)
                                                                     ttttCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGattca                                                                                 >  4:278841/1‑149 (MQ=255)
                                                                      tttCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGattcat                                                                                >  2:925163/1‑149 (MQ=255)
                                                                        tCTATATCGCCTTGCTAGTGATTACCTTGGCCGTATATTGGTGGCATTCCAAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGattcatt                                                                               <  2:1326204/149‑1 (MQ=25)
                                                                        tCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGattcattc                                                                              <  2:623921/149‑1 (MQ=255)
                                                                          tataTCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCAc                                                                            <  2:1136335/149‑1 (MQ=255)
                                                                          tataTCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCAc                                                                            <  1:95452/149‑1 (MQ=255)
                                                                                   tGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCt                                                                   <  3:1687531/149‑1 (MQ=255)
                                                                                     cGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTc                                                                 <  1:1583007/149‑1 (MQ=255)
                                                                                       tAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCt                                                               <  1:659911/149‑1 (MQ=255)
                                                                                           gATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTaa                                                           >  4:397599/1‑149 (MQ=255)
                                                                                            aTTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTc                                                                                                             >  2:329253/1‑98 (MQ=255)
                                                                                            aTTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTaaa                                                          <  1:391919/149‑1 (MQ=255)
                                                                                             ttACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGattcatt                                                                               >  1:1518674/1‑127 (MQ=255)
                                                                                             ttACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGattcatt                                                                               <  2:1518674/127‑1 (MQ=255)
                                                                                               aaaagcgcgacatcatgccgcgcaaaggataatcaaatattttactctatataaTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAAcc                                                        >  2:1675317‑M1/55‑149 (MQ=255)
                                                                                                aaagcgcgacatcatgccgcgcaaaggataatcaaatattttactctatataaTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTc                                                                                                             <  2:1583538‑M1/42‑1 (MQ=255)
                                                                                                aaagcgcgacatcatgccgcgcaaaggataatcaaatattttactctatataaTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTc                                                                                                             >  1:1583538‑M1/54‑95 (MQ=255)
                                                                                                 cTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGaa                                                     <  3:397599/149‑1 (MQ=255)
                                                                                                 cTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGACTCATTCACTTGCCGCCTTCCTGTAAACCGaa                                                     <  4:1353098/149‑1 (MQ=255)
                                                                                                        gTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCt                                                                                         <  3:499033/106‑1 (MQ=255)
                                                                                                             tGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTa                                         >  1:67976/1‑149 (MQ=255)
                                                                                                             tGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTa                                         >  2:1342673/1‑149 (MQ=255)
                                                                                                                tCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTaaaa                                      >  3:1211603/1‑149 (MQ=255)
                                                                                                                   gCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTTCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAatat                                   >  4:1009001/1‑149 (MQ=255)
                                                                                                                    cATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATAtt                                  <  4:499734/149‑1 (MQ=255)
                                                                                                                    cATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATAtt                                  <  3:41554/149‑1 (MQ=255)
                                                                                                                     aTT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTa                                                                                                   >  2:660852/1‑83 (MQ=255)
                                                                                                                     aTT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATAttt                                 <  2:647067/149‑1 (MQ=255)
                                                                                                                       t‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGa                               <  1:125337/149‑1 (MQ=255)
                                                                                                                       t‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGa                               <  3:278841/149‑1 (MQ=255)
                                                                                                                       t‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGa                               <  1:1521238/149‑1 (MQ=255)
                                                                                                                       t‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGa                               <  1:925163/149‑1 (MQ=255)
                                                                                                                          tAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTa                                                                                                   <  2:766050/79‑1 (MQ=255)
                                                                                                                          tAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGaa                                                     <  1:1473758/125‑1 (MQ=255)
                                                                                                                          tAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTaaaa                                      <  1:629466/140‑1 (MQ=255)
                                                                                                                          tAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTaaaa                                      >  2:629466/1‑140 (MQ=255)
                                                                                                                          tAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGAtt                             >  2:1424531/1‑149 (MQ=255)
                                                                                                                          tAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGAtt                             >  2:1084667/1‑149 (MQ=255)
                                                                                                                          tAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGAtt                             >  1:843908/1‑149 (MQ=255)
                                                                                                                          tAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTGTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGaa                                                     >  2:1473758/1‑125 (MQ=255)
                                                                                                                           aaaaaaTAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTa                            >  4:917339/1‑149 (MQ=255)
                                                                                                                           aaaaaaTAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTa                            >  2:1594946/1‑149 (MQ=255)
                                                                                                                            aaaaaTAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTAATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTAt                           >  3:1564398/1‑149 (MQ=255)
                                                                                                                             aaaaTAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATc                          <  4:879529/149‑1 (MQ=255)
                                                                                                                              aaaTAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAAtt                                                   >  4:1491319/1‑123 (MQ=255)
                                                                                                                              aaaTAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAAtt                                                   <  3:1491319/123‑1 (MQ=255)
                                                                                                                              aaaTAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATcc                         >  4:1369034/1‑149 (MQ=255)
                                                                                                                                aTAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTACACCGAATTATATAGAGTAAAATATTTGATTATCCtt                       >  4:1200484/1‑149 (MQ=255)
                                                                                                                                   aaCCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTgc                    <  1:216941/149‑1 (MQ=255)
                                                                                                                                    aCCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTgcg                   >  3:673442/1‑149 (MQ=255)
                                                                                                                                      ttttactctatatacTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTaaaa                                      <  4:1112415‑M1/113‑1 (MQ=255)
                                                                                                                                      ttttactctatatacTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTAAATAGAGTaaaa                                      >  3:1112415‑M1/16‑128 (MQ=255)
                                                                                                                                      cGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTgc                    >  4:268602/1‑146 (MQ=255)
                                                                                                                                        ttACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATAtt                                  >  1:64005/1‑130 (MQ=255)
                                                                                                                                        ttACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGc               >  1:1315587/1‑149 (MQ=255)
                                                                                                                                            tctatatacTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATaga                                            <  2:441006‑M1/107‑1 (MQ=255)
                                                                                                                                            tCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCatga           >  3:194891/1‑149 (MQ=255)
                                                                                                                                             cGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCatgat          <  4:570263/149‑1 (MQ=255)
                                                                                                                                              gTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCt                                                               >  2:1551965/1‑95 (MQ=255)
                                                                                                                                               tCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGt        >  2:448030/1‑149 (MQ=255)
                                                                                                                                               tCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGt        >  1:1383875/1‑149 (MQ=255)
                                                                                                                                               tCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGt        >  2:783739/1‑149 (MQ=255)
                                                                                                                                                   aCTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTcgcg    >  2:643943/1‑149 (MQ=255)
                                                                                                                                                     TTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTTAACCGAATTATATAGAGTAAAATATTTGATTa                            >  4:1445016‑M1/1‑123 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
TCCCGAAAGCGTTTGGTAGCTCGCTGGCATTAACGGGTTCGCCAGTCGGCGCAATGAAGGTATTTTTGATTTTCTATATCGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATT‑CTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTGTAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCT  >  NC_000913/1279218‑1279514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.