| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,106,998 | A→T | 6.2% | intergenic (+28/+22) | nupG → / ← speC | nucleoside transporter/ornithine decarboxylase, constitutive |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,106,998 | 0 | A | T | 6.2% | 550.8 / 18.5 | 160 | intergenic (+28/+22) | nupG/speC | nucleoside transporter/ornithine decarboxylase, constitutive |
| Reads supporting (aligned to +/- strand): ref base A (78/72); new base T (3/7); total (81/79) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.07e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.79e-01 | |||||||||||
Only 100 of 164 total aligned reads displayed.
CTGGCAGACCGTATGGTTGATTTTCGCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACG > NC_000913/3106850‑3107145 | atGGCAGTCCGTATGGTTGATTTTCGCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGCCGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGaa < 2:837039/148‑1 (MQ=255) gCAGACCGTATGGTTGATTTTCGCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGt < 3:1539485/149‑1 (MQ=255) gACCGTATGGTTGATTTTCGCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑c < 4:184094/149‑1 (MQ=255) tATGGTTGATTTTCGCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGtt < 3:417035/149‑1 (MQ=255) aTGGTTGATTTTCGCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCACCTTCTGGCGA‑CCCGttt < 1:175244/149‑1 (MQ=255) gTTGATTTTCGCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGtttttt < 1:25416/149‑1 (MQ=255) gTTGATTTTCGCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGtttttt > 4:1317633/1‑149 (MQ=255) gTTGATTTTCGCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGtttttt > 3:697166/1‑149 (MQ=255) gTTGATTTTCGCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGtttttt > 2:702212/1‑149 (MQ=255) ttGATTTTCGCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGttttttt > 4:867636/1‑149 (MQ=255) gATTTTCGCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTa < 4:864874/149‑1 (MQ=255) aTTTTCGCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCTCTAATGTCGCAAAGATAAACGGGTCACCTTCTGGCGT‑CCCGtttttctttg < 2:780343/149‑3 (MQ=255) ttttCGCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTAtt < 2:977389/149‑1 (MQ=255) tttCGCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTc < 4:697166/149‑1 (MQ=255) ttCGCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCt > 2:175983/1‑149 (MQ=255) tCGCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCtt < 3:966242/149‑1 (MQ=255) cGCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTa < 3:710489/149‑1 (MQ=255) gCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCTACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTAc < 4:1325818/149‑1 (MQ=255) gCTGGTTACCCCGTGGTTCGGGAATTCGCGTTCATGGCGTTGTTCAAATATAATCACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCGCTATTTTCGCAAAGAAAAACGGGTCCCCTCAAGGTGA‑CCCGGTTTTTTTATTCtttc < 2:1062237/149‑3 (MQ=255) cTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCACCTTCTGGCGA‑CCCGtttttctt > 4:880953/1‑140 (MQ=38) cTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCACCTTCTGGCGA‑CCCGtttttctt < 3:880953/140‑1 (MQ=38) tGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACtt > 3:136615/1‑149 (MQ=255) tGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACtt > 4:61218/1‑149 (MQ=255) ttACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCaa > 2:724458/1‑149 (MQ=255) tACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAac < 1:702212/149‑1 (MQ=255) tACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAac > 2:398202/1‑149 (MQ=255) tCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGaa < 3:468656/115‑1 (MQ=255) tCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGaa > 4:468656/1‑115 (MQ=255) tCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGa < 1:825044/120‑1 (MQ=255) tCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAAcaca > 1:1543614/1‑149 (MQ=255) tCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAAcaca > 2:36969/1‑149 (MQ=255) tCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCACCTTCTGGCGA‑CCCGtttttctttgc < 4:1529129/135‑4 (MQ=38) tCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCACCTTCTGGCGA‑CCCGtttttctttgc > 3:1529129/1‑132 (MQ=38) tCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGACGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAAcaca > 4:331209/1‑149 (MQ=255) tGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAAc < 4:1023444/149‑1 (MQ=255) cTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTAc > 3:973751/1‑149 (MQ=255) tGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACa > 4:1286144/1‑149 (MQ=255) cTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGt < 4:1659939/104‑1 (MQ=255) ttCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGt > 2:1527024/1‑149 (MQ=255) ttCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGt > 1:1529215/1‑149 (MQ=255) tCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGtt < 3:299108/149‑1 (MQ=255) gcgTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTc < 2:56225/149‑1 (MQ=255) gcgTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACACAACCGTACAACCGTTTc < 1:359341/149‑1 (MQ=255) cgTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCa < 1:175983/149‑1 (MQ=255) gTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGt < 1:101823/98‑1 (MQ=255) tCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGc > 3:107647/1‑149 (MQ=255) tCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGc < 3:1162069/149‑1 (MQ=255) tCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGc < 2:637144/149‑1 (MQ=255) tCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGc < 4:1380008/149‑1 (MQ=255) ggCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCTACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATc < 1:1440931/149‑1 (MQ=255) aaaTATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGtt < 1:398202/149‑1 (MQ=255) aaaTATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGtt < 1:724458/149‑1 (MQ=255) aaaTATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGtt > 4:1263983/1‑149 (MQ=255) aaTATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGttt > 2:1669571/1‑149 (MQ=255) atatAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTc < 4:294339/149‑1 (MQ=255) atatAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTc < 2:1353181/149‑1 (MQ=255) ataAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGc < 4:136615/149‑1 (MQ=255) ataAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGc < 2:284915/149‑1 (MQ=255) taAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCt < 3:1233671/149‑1 (MQ=255) aaaCACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCta > 1:393593/1‑149 (MQ=255) acacGTTCGTGTCCCGACAGGCATACAGACGGTTAGCCACTAATTATGCAAAGAAACACGGGGCGCCCGAAGGTGC‑CCCGTTTAATTAATCCTAACAACAACACATAACCGAACAACAGCTTCGCGCCTTCCTCATCGTTTTCGCtata > 4:1229926/1‑149 (MQ=255) gTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAaca > 3:1004428/1‑149 (MQ=255) ttCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAacac < 1:980914/149‑1 (MQ=255) gtgtCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCtt < 1:1060328/149‑1 (MQ=255) gtgtCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCtt < 1:1669571/149‑1 (MQ=255) gtCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGc < 4:288028/149‑1 (MQ=255) tCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTc < 3:639786/81‑1 (MQ=255) tCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCa > 3:274692/1‑149 (MQ=255) tCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCa < 2:1529215/149‑1 (MQ=255) ccGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGc > 1:993212/1‑149 (MQ=255) cGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCt > 4:1115418/1‑149 (MQ=255) aCAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTcc < 4:107647/149‑1 (MQ=255) gCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCg > 2:273519/1‑149 (MQ=255) gCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCg > 3:558439/1‑149 (MQ=255) acacaGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAGCCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGaa < 3:346618/149‑1 (MQ=255) acacaGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGaa > 2:1682219/1‑149 (MQ=255) acacaGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTCTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGaa > 4:326949/1‑149 (MQ=255) gACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCACCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATcc < 1:1011406/149‑1 (MQ=255) aCGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATccc < 2:393593/149‑1 (MQ=255) ccACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTa > 3:325177/1‑59 (MQ=255) ccACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGcaacaa > 2:682922/1‑149 (MQ=255) cACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACaaa < 4:717560/149‑1 (MQ=255) ttaaCGCAAAAAAAACCGGTCCGCCA‑AAGGTTACCCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCAc < 2:120121/146‑1 (MQ=255) aTTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGATTCGCTATAAACACCTTGCAGCTCCGGc < 3:1447713/126‑1 (MQ=255) ttACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCAcc < 1:273519/149‑1 (MQ=255) aaaGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCcttct > 4:1432238/1‑149 (MQ=255) aaaGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCcttct > 2:751870/1‑149 (MQ=255) aaaGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCcttct > 3:1476865/1‑149 (MQ=255) aaaGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCcttct > 4:1499380/1‑149 (MQ=255) aaGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCAc < 4:744849/75‑1 (MQ=255) aaGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCAc > 3:744849/1‑75 (MQ=255) aaGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCcttctt > 2:1229568/1‑149 (MQ=255) aaGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCcttctt > 2:570438/1‑149 (MQ=255) gAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTcc > 1:639843/1‑149 (MQ=255) aaaaaaCGGGTCACCTTCTGGCGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTcc > 3:997789/2‑149 (MQ=255) gggTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCaa < 4:1476865/149‑1 (MQ=255) gTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAgg < 4:721108/149‑1 (MQ=255) tCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACACAACCGAACAACAGTTGCACGCTATCCGCTTAGGTTTCGCTATAAACACCTTTCCGCTCCGGCGACAATCCCGGCGACTAATTCACCCCTTCTTCCAGTCCAAGGa > 4:225476/1‑149 (MQ=255) gCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGaaa > 4:393539/1‑149 (MQ=255) cAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATa > 1:126768/1‑149 (MQ=255) | CTGGCAGACCGTATGGTTGATTTTCGCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGA‑CCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACG > NC_000913/3106850‑3107145 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |