New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3721045 =	17 (1.510)	51 (4.570)	46/260	NT	76.8%	noncoding (413/1443 nt)	IS150	repeat region
	?	NC_000913	= 3839774	14 (1.250)					coding (220/819 nt)	nlpA	cytoplasmic membrane lipoprotein‑28

GTGGGATGAGCTAAGGCTTTCAGCTTTTTTAGATACATAAGCCGCGTTTCAAGAAATCGAACTTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3721191‑3721045 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCCAAAAAAA  <  NC_000913/3839774‑3839630                                                                                                                                                                                                                                                                                                      GTGGGATGAGCTAAGGCTTTCAGCTTTTTTAGATACATAAGCCGCGTTTCAAGAAATCGAACTTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAA                                                                                                                                                 >  3:73667/1‑149     GATGAGCTAAGGCTTTCAGCTTTTTTAGATACATAAGCCGCGTTTCAAGAAATCGAACTTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGAT                                                                                                                                             <  3:55692/149‑1         AGCTAAGGCTTTCAGCTTTTTTAGATACATAAGCCGCGTTTCAAGAAATCGAACTTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGA                                                                                                                                         <  4:78249/149‑1            TAAGGCTTTCAGCTTTTTTAGATACATAAGCCGCGTTTCAAGAAATCGAACTTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAA                                                                                                                                      >  3:53622/1‑149                 CTTTCAGCTTTTTTAGATACATAAGCCGCGTTTCAAGAAATCGAACTTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCAT                                                                                                                                 <  1:34746/149‑1                 CTTTCAGCCTTTTTCGATACATAAGCCGCGTTTCAAGAAATCGAACTTGCCTTTCAAGATCCTCAATGCGTCGGGCTTTTGACAGCTCCAATCCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCAT                                                                                                                                 <  3:62665/149‑1                  TTTCAGCTTTTTTAGATACATAAGCCGCGTTTCAAGAAATCGAACTTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATG                                                                                                                                >  4:94235/1‑149                  TTTCAGCTTTTTTAGATACATAAGCCGCGTTTCAAGAAATCGAACTTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATG                                                                                                                                <  4:10496/149‑1                   TTCAGCTTTTTTAGATACATAAGCCGCGTTTCAAGAAATCGAACTTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGG                                                                                                                               <  4:70078/149‑1                    TCAGCTTTTTTAGATACATAAGCCGCGTTTCAAGAAATCGAACTTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGC                                                                                                                              <  1:57487/149‑1                      AGCTTTTTTAGATACATAAGCCGCGTTTCAAGAAATCGAACTTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGA                                                                                                                            >  4:59884/1‑149                                 ATACATAAGCCGCGTTTCAAGACATCGAACTTGCCTTTCAAGATCCTCAATGCGTCGGTTTTTTAACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGTCGAACTTGATGCGA                                                                                                                 >  4:15537/1‑149                                                  CAAGAAATCGAACTTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGA                                                                                                <  4:42979/149‑1                                                   AAGAAATCGAACTTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGAC                                                                                               >  1:7864/1‑149                                                     GAAATCGAACTTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCC                                                                                             >  4:54242/1‑149                                                      AAATCGAACTTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCT                                                                                            <  3:26489/149‑1                                                      AAATCGAACTTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCT                                                                                            >  4:75932/1‑149                                                         TCGAACTTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGC‑TTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCT                                                                                        >  3:76035/1‑149                                                           GAACTTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTT                                                                                       <  4:42969/149‑1                                                             ACTTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGC‑TTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAA                                                                                    <  4:76035/149‑1                                                               TTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAAC                                                                                   >  4:36113/1‑149                                                               TTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAAC                                                                                   >  4:55784/1‑149                                                               TTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAAC                                                                                   <  3:94235/149‑1                                                                   CTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTC                                                                                         <  1:43344/139‑1                                                                   CTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTC                                                                                         >  2:43344/1‑139                                                                       CAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAAT                                                                           <  4:12037/149‑1                                                                         AGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTT                                                                                       <  3:87963/135‑1                                                                         AGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTT                                                                                       >  4:87963/1‑135                                                                            TCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGC                                                                      <  3:56896/149‑1                                                                            TCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGC                                                                      >  4:506/1‑149                                                                                 AATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATG                                                                 <  4:53622/149‑1                                                                                     CGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTA                                                             <  3:75932/149‑1                                                                                         GGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAA                                                         <  3:91547/149‑1                                                                                            CTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTG                                                      <  2:50521/149‑1                                                                                                 GACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGC                                                 >  4:1813/1‑149                                                                                                  ACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCG                                                >  3:67891/1‑149                                                                                                       TCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGcg                                           >  3:82398/1‑147                                                                                                       TCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGNNGn                                           <  2:53883/149‑2                                                                                                       TCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGT                                                    <  4:67247/140‑1                                                                                                       TCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGT                                                    >  3:67247/1‑140                                                                                                           ATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAAT                                       <  4:66601/149‑1                                                                                                            TGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCGTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATA                                      <  4:67891/149‑1                                                                                                                GATGCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGGCCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTT                                  <  2:64478/149‑1                                                                                                                   GCCGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGT                               >  2:62011/1‑149                                                                                                                     CGCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCT                             <  1:49275/149‑1                                                                                                                      GCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTT                            >  4:17675/1‑149                                                                                                                      GCTTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTT                            <  2:37272/149‑1                                                                                                                       CTTTTTCTGGATCAATTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAGCTGGTAGCGGTGGGAAATACGTTTGTCTTC                           <  3:15537/149‑1                                                                                                                        TTTTTCTGGATCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCC                          <  4:73667/149‑1                                                                                                                                  TCAACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGG                >  4:88720/1‑149                                                                                                                                     ACTGATATTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTA             >  3:56839/1‑149                                                                                                                                            TTGCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCCAAA      >  4:78647/1‑149                                                                                                                                              GCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAAT                                                                           <  4:24416/78‑1                                                                                                                                              GCAATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAAT                                                                           >  3:24416/1‑78                                                                                                                                                AATGAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCCAAAAAAA  >  1:69952/1‑149                                                                                                                                                                                                                                                                                                      GTGGGATGAGCTAAGGCTTTCAGCTTTTTTAGATACATAAGCCGCGTTTCAAGAAATCGAACTTGCCTTTCAAGATCCTCAATGCGTCGGTCTTTTGACAGCTCCAATGCTGATGCCGCTTTTTCTGGATCAACTGATATTGCAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3721191‑3721045 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gAACGATGCGACAAATCATGGCGAACTTGATGCGAATGTCTTCCAGCATCGACCCTTTCTTGAACAAGATAATCAGGCGCATGGTTATAAACTGGTAGCGGTGGGAAATACGTTTGTCTTCCCTATGGCGGGTTATTCCAAAAAAA  <  NC_000913/3839774‑3839630

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.